View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_high_24 (Length: 424)
Name: NF3545_high_24
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 32321435 - 32320995
Alignment:
| Q |
1 |
gttgaacctaccccgaacctcatgataaatttaagaacgtacggctcacatataaggtgagaccaaccctaactat---------acccccactcaattg |
91 |
Q |
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| T |
32321435 |
gttgaacctaccccgaaccacatgataaatttaagaacgtacggctcacatataaggtgagaccaaccctaacttttacggtcgcacccccactcaattg |
32321336 |
T |
|
| Q |
92 |
cctatctagtctagttcatttatatcataattcaacttccaatttattgtttcaaatactagtactacattcgtcccaacttatgattttactctagtta |
191 |
Q |
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| T |
32321335 |
cctatctagtctagttcatttatttcataattcaacttccaatttattgtttcaaatactagtactacattcgtcccaacttatgattttactctagtta |
32321236 |
T |
|
| Q |
192 |
tgaggattt-aatcttggttttattttttgaacttcagatcttttatatattatacattatctataccaattaaattaattttggtttaatccgttaacg |
290 |
Q |
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||||||||| |||||||||||||||||||| ||||||| |||| ||||||||| ||||||||||| ||||||||||||| ||| ||| || ||||||| |
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| T |
32321235 |
tgaggatttggatcttggttttattttttgaccttcagacctttcatatattatgcattatctatatcaattaaattaatcttgacttagtctgttaacg |
32321136 |
T |
|
| Q |
291 |
ccttcttgttttatga-----------------attagcatgcatatagcaatctagatcacttgtattgattttaagatatggatggagaatgtcacaa |
373 |
Q |
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||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32321135 |
ccttcttattttctgaaagttttatactatcttattagcatgcatatagcaatctagatcacttgtattgattctaagatatggatggagaatgtcacaa |
32321036 |
T |
|
| Q |
374 |
ctcataattattttaattgtattgtattgttaacccctttg |
414 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32321035 |
ctcataattattttaattgtattgtattgataacccctttg |
32320995 |
T |
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