View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3545_high_28 (Length: 399)

Name: NF3545_high_28
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3545_high_28
NF3545_high_28
[»] chr3 (14 HSPs)
chr3 (178-382)||(42770061-42770265)
chr3 (10-107)||(42769893-42769990)
chr3 (190-317)||(42772327-42772453)
chr3 (190-362)||(42770173-42770341)
chr3 (190-276)||(42772772-42772857)
chr3 (190-353)||(42772794-42772954)
chr3 (286-353)||(42772323-42772390)
chr3 (227-336)||(42770703-42770811)
chr3 (275-353)||(42770058-42770137)
chr3 (204-271)||(42772963-42773029)
chr3 (228-284)||(42772452-42772508)
chr3 (178-216)||(42772002-42772040)
chr3 (275-353)||(42772980-42773058)
chr3 (275-319)||(42771999-42772043)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 178 - 382
Target Start/End: Original strand, 42770061 - 42770265
Alignment:
Q  178 gttctgcagctaaaggtgagaaagcggaagaagaaaacttctaaaaacgttcaagaaggttttgtggctgaaggtgaaatctctaagaaggttccaaaag 277  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42770061 gttctgcagctaaaggtgagaaagcggaagaagaaaacttttaaaaacgttcaagaaggttttgtggctgaaggtgaaatctctaagaaggttccaaaag 42770160  T
Q  278 gttctgcggttgaaggtgagaaagaggaagaagaaaactctaggaacgttcaagaaggtttcgtggttgaaggtgagacctctgatacagtttgagaagg 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42770161 gttctgcggttgaaggtgagaaagaggaagaagaaaactctaggaacgttcaagaaggtttcgtggttgaaggtgagacctctaatacagtttgagaagg 42770260  T
Q  378 ttctg 382  Q
    |||||    
T  42770261 ttctg 42770265  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 42769893 - 42769990
Alignment:
Q  10 aagaatatgcaaagctgaagaaatggctgcgactacgtctgcgatgccgggaagagtaactcgttcattggtgaagagttcaggtttgtcaagttact 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769893 aagaaaatgcaaagctgaagaaatggctgcgactacgtctgcgatgccgggaagagtaactcgttcattggtgaagagttcaggtttgtcaagttact 42769990  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 190 - 317
Target Start/End: Original strand, 42772327 - 42772453
Alignment:
Q  190 aaggtgagaaagcggaagaagaaaacttctaaaaacgttcaagaaggttttgtggctgaaggtgaaatctctaagaaggttccaaaaggttctgcggttg 289  Q
    |||||| |||||||||||||||||||| |||| |||||| |||||||||  ||||||||||||||||||| | ||| ||||||| |||||| |||||  |    
T  42772327 aaggtgggaaagcggaagaagaaaact-ctaagaacgttaaagaaggttccgtggctgaaggtgaaatctttgagacggttccagaaggttttgcggccg 42772425  T
Q  290 aaggtgagaaagaggaagaagaaaactc 317  Q
    ||||||||||||||||||||||||||||    
T  42772426 aaggtgagaaagaggaagaagaaaactc 42772453  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 190 - 362
Target Start/End: Original strand, 42770173 - 42770341
Alignment:
Q  190 aaggtgagaaagcggaagaagaaaacttctaaaaacgttcaagaaggttttgtggctgaaggtgaaatctctaagaaggttccaaaaggttctgcggttg 289  Q
    |||||||||||| |||||||||||||| |||  ||||||||||||||||| |||| ||||||||| | |||||| |  |||  | |||||||||||||||    
T  42770173 aaggtgagaaagaggaagaagaaaact-ctaggaacgttcaagaaggtttcgtggttgaaggtgagacctctaatacagtttgagaaggttctgcggttg 42770271  T
Q  290 aaggtgagaaagaggaagaagaaaactctaggaacgttcaagaaggtttcgtggttgaaggtgagacctctga 362  Q
    |||||||||||   | |||| ||||||||| |||| ||||||||||||  | |  ||||||||| ||||||||    
T  42770272 aaggtgagaaa---gcagaaaaaaactctaagaacattcaagaaggttctgcgactgaaggtgaaacctctga 42770341  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 276
Target Start/End: Complemental strand, 42772857 - 42772772
Alignment:
Q  190 aaggtgagaaagcggaagaagaaaacttctaaaaacgttcaagaaggttttgtggctgaaggtgaaatctctaagaaggttccaaaa 276  Q
    |||| ||||||| |||||||||||||| |||| |||||| | ||||||||||||||| |||||||||||||||||||||||||||||    
T  42772857 aaggcgagaaaggggaagaagaaaact-ctaagaacgttgatgaaggttttgtggctaaaggtgaaatctctaagaaggttccaaaa 42772772  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 353
Target Start/End: Complemental strand, 42772954 - 42772794
Alignment:
Q  190 aaggtgagaaagcggaagaagaaaacttctaaaaacgttcaagaaggttttgtggctgaaggtgaaatctctaagaaggttccaaaaggttctgcggttg 289  Q
    ||||||| ||||||| |||||||||||   || |||| |||| ||| ||||||||||||| || |||||| | ||| ||||||| |||||| |  ||  |    
T  42772954 aaggtgacaaagcgggagaagaaaact---aagaacgatcaaaaagattttgtggctgaaagtcaaatctatgagatggttccataaggttttttggccg 42772858  T
Q  290 aaggtgagaaagaggaagaagaaaactctaggaacgttcaagaaggtttcgtggttgaaggtga 353  Q
    |||| ||||||| ||||||||||||||||| ||||||| | |||||||| |||| | |||||||    
T  42772857 aaggcgagaaaggggaagaagaaaactctaagaacgttgatgaaggttttgtggctaaaggtga 42772794  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 286 - 353
Target Start/End: Original strand, 42772323 - 42772390
Alignment:
Q  286 gttgaaggtgagaaagaggaagaagaaaactctaggaacgttcaagaaggtttcgtggttgaaggtga 353  Q
    |||||||||| ||||| ||||||||||||||||| ||||||| ||||||||| ||||| |||||||||    
T  42772323 gttgaaggtgggaaagcggaagaagaaaactctaagaacgttaaagaaggttccgtggctgaaggtga 42772390  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 336
Target Start/End: Complemental strand, 42770811 - 42770703
Alignment:
Q  227 ttcaagaaggttttgtggctgaaggtgaaatctctaagaaggttccaaaaggttctgcggttgaaggtgagaaagaggaagaagaaaactctaggaacgt 326  Q
    ||||||||  || |||||||||||||||||||||| |||| ||| || ||| || || ||||||||||||||||| || |||||||| ||||| ||| ||    
T  42770811 ttcaagaaacttatgtggctgaaggtgaaatctcttagaatgtttcacaagattttgtggttgaaggtgagaaagcgg-agaagaaagctctaagaatgt 42770713  T
Q  327 tcaagaaggt 336  Q
    | || |||||    
T  42770712 taaataaggt 42770703  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 353
Target Start/End: Original strand, 42770058 - 42770137
Alignment:
Q  275 aaggttctgcggttgaaggtgagaaagaggaagaagaaaac-tctaggaacgttcaagaaggtttcgtggttgaaggtga 353  Q
    |||||||||| | | |||||||||||| ||||||||||||| | ||  ||||||||||||||||| |||| |||||||||    
T  42770058 aaggttctgcagctaaaggtgagaaagcggaagaagaaaacttttaaaaacgttcaagaaggttttgtggctgaaggtga 42770137  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 42773029 - 42772963
Alignment:
Q  204 gaagaagaaaacttctaaaaacgttcaagaaggttttgtggctgaaggtgaaatctctaagaaggttc 271  Q
    ||||||||||||| |||| ||| ||||||||| ||||||||||||||||||||| ||  |||||||||    
T  42773029 gaagaagaaaact-ctaagaacattcaagaagcttttgtggctgaaggtgaaatatccgagaaggttc 42772963  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 42772452 - 42772508
Alignment:
Q  228 tcaagaaggttttgtggctgaaggtgaaatctctaagaaggttccaaaaggttctgc 284  Q
    ||||||||||| ||||||||||||||||| || | ||||||||| | ||||||||||    
T  42772452 tcaagaaggttctgtggctgaaggtgaaacctttgagaaggttctagaaggttctgc 42772508  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 42772002 - 42772040
Alignment:
Q  178 gttctgcagctaaaggtgagaaagcggaagaagaaaact 216  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  42772002 gttctgcagctgaaggtgagaaagcggaagcagaaaact 42772040  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 353
Target Start/End: Complemental strand, 42773058 - 42772980
Alignment:
Q  275 aaggttctgcggttgaaggtgagaaagaggaagaagaaaactctaggaacgttcaagaaggtttcgtggttgaaggtga 353  Q
    |||||||||  | ||||| || |||||  |||||||||||||||| |||| ||||||||| ||| |||| |||||||||    
T  42773058 aaggttctgttgctgaagctgggaaagtagaagaagaaaactctaagaacattcaagaagcttttgtggctgaaggtga 42772980  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 42771999 - 42772043
Alignment:
Q  275 aaggttctgcggttgaaggtgagaaagaggaagaagaaaactcta 319  Q
    |||||||||| | |||||||||||||| ||||| |||||||||||    
T  42771999 aaggttctgcagctgaaggtgagaaagcggaagcagaaaactcta 42772043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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