View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3545_high_29 (Length: 398)

Name: NF3545_high_29
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3545_high_29
NF3545_high_29
[»] chr7 (1 HSPs)
chr7 (16-389)||(19806401-19806768)
[»] chr2 (27 HSPs)
chr2 (155-398)||(39136173-39136416)
chr2 (1-167)||(39135983-39136149)
chr2 (55-398)||(39474214-39474560)
chr2 (223-383)||(39458169-39458329)
chr2 (177-398)||(39422426-39422647)
chr2 (177-394)||(39416310-39416530)
chr2 (267-398)||(39129487-39129618)
chr2 (177-398)||(39488127-39488348)
chr2 (262-398)||(39151897-39152033)
chr2 (15-162)||(39422722-39422869)
chr2 (266-398)||(39601994-39602126)
chr2 (19-169)||(39416559-39416709)
chr2 (277-394)||(39123536-39123653)
chr2 (263-398)||(39199419-39199554)
chr2 (261-331)||(44623617-44623687)
chr2 (263-335)||(39214925-39214997)
chr2 (263-339)||(39450499-39450575)
chr2 (267-398)||(39495480-39495611)
chr2 (223-337)||(27154981-27155095)
chr2 (266-335)||(39382213-39382282)
chr2 (263-335)||(39399013-39399085)
chr2 (263-334)||(39220162-39220233)
chr2 (276-335)||(39391666-39391725)
chr2 (269-311)||(39479182-39479224)
chr2 (263-333)||(44614473-44614543)
chr2 (275-335)||(39161102-39161162)
chr2 (275-335)||(39208032-39208092)
[»] chr8 (2 HSPs)
chr8 (262-333)||(44951384-44951455)
chr8 (56-92)||(32984770-32984806)
[»] chr5 (1 HSPs)
chr5 (276-335)||(33559636-33559695)
[»] chr6 (1 HSPs)
chr6 (267-305)||(16112428-16112466)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 389
Target Start/End: Original strand, 19806401 - 19806768
Alignment:
Q  16 gaagatgatgatgatgatgctttatcagcaaggtttcataagaagagggatacaactacactgtcagttaagagggtattcgatgacaacaattctttgt 115  Q
    ||||| |||||||||||| ||||||||  | ||||||||||||||||| |||||||||||||| |||| |||||||||| ||||| ||||||||| ||||    
T  19806401 gaagaagatgatgatgatactttatcattatggtttcataagaagaggcatacaactacactgccagtcaagagggtatccgatgtcaacaattccttgt 19806500  T
Q  116 gtggttcgatgaagaaatccaaggtgtctccaacaacatatgatgatgatgacgacgacgacatgtcaactgataaatcattttccacactcaaagaaaa 215  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |   | |      |||||||||||||||||||||||||||||||||||| |    
T  19806501 gtggttcgatgaagaaatccaaggtgtctccaacaccatatgatgatgttcctgcc------atgtcaactgataaatcattttccacactcaaagaaga 19806594  T
Q  216 acttgtgttggtagaaaaatcatttgaggatatcagaagcaagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19806595 acttgtgttggtagaaaaatcatttgaggatatcagaagcaagacacaagtagaagagaggagattgcagtccataaagagagatattgaggattgctgc 19806694  T
Q  316 gaagatcttgaaaataagaaaaaggaaattagggatgttggaagaattatcgaagctcgcaagaaaatgcaggg 389  Q
    ||||||||||||||||||||||||||||||||  ||||||| ||||||| | ||||||||||||||||||||||    
T  19806695 gaagatcttgaaaataagaaaaaggaaattagttatgttgggagaattaacaaagctcgcaagaaaatgcaggg 19806768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 155 - 398
Target Start/End: Original strand, 39136173 - 39136416
Alignment:
Q  155 atgatgatgatgacgacgacgacatgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaag 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39136173 atgatgatgatgacgacgacgacatgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaag 39136272  T
Q  255 caagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgtt 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39136273 caagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgtt 39136372  T
Q  355 ggaagaattatcgaagctcgcaagaaaatgcagggaaaaattga 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  39136373 ggaagaattatcgaagctcgcaagaaaatgcagggaaaaattga 39136416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 39135983 - 39136149
Alignment:
Q  1 caatcggcttctcgtgaagatgatgatgatgatgctttatcagcaaggtttcataagaagagggatacaactacactgtcagttaagagggtattcgatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39135983 caatcggcttctcgtgaagatgatgatgatgatgctttatcagcaaggtttcataagaagagggatacaactacactgtcagttaagagggtattcgatg 39136082  T
Q  101 acaacaattctttgtgtggttcgatgaagaaatccaaggtgtctccaacaacatatgatgatgatga 167  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39136083 acaacaattccttgtgtggttcgatgaagaaatccaaggtgtctccaacaccatatgatgatgatga 39136149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 55 - 398
Target Start/End: Complemental strand, 39474560 - 39474214
Alignment:
Q  55 aagaagagggatacaactacactgtcagttaagagggtattcgatgacaacaattctttgtgtggttcgatgaagaaatccaaggtgtctccaacaacat 154  Q
    |||||||||| ||| |  |||||| | |||||||||||||| ||| |||||| ||| ||||| |||| ||||||||||||||||||||| |||||| |||    
T  39474560 aagaagaggggtactatcacactgcctgttaagagggtatttgataacaacagttccttgtgcggtttgatgaagaaatccaaggtgtccccaacatcat 39474461  T
Q  155 atgatgatgatgacgacgac---gacatgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcag 251  Q
    ||||||||||||| || |     | ||||||||| ||||||||||||||| |||||||  || ||||||  || |||||||||||||||||||||  |      
T  39474460 atgatgatgatgatgatgttcctgccatgtcaacggataaatcattttcctcactcaagaaagaacttgcatttgtagaaaaatcatttgaggattgcca 39474361  T
Q  252 aagcaagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggat 351  Q
    ||| | ||| ||| ||||| ||  ||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||  ||    
T  39474360 aaggacgacgcaaatagaaaaggagagattgcattccataaagagagatattgaggagtgctccgaagagcttgaaaataagaaaaagaaaattagtcat 39474261  T
Q  352 gttggaagaattatcgaagctcgcaagaaaatgcagggaaaaattga 398  Q
    ||||||||||| | |||||||| ||||||||||||||||||||||||    
T  39474260 gttggaagaatgaacgaagctcacaagaaaatgcagggaaaaattga 39474214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 223 - 383
Target Start/End: Original strand, 39458169 - 39458329
Alignment:
Q  223 ttggtagaaaaatcatttgaggatatcagaagcaagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatc 322  Q
    ||||||||||||||||||||||||  || ||| | || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  39458169 ttggtagaaaaatcatttgaggattgcaaaaggacgagacaagtagaagagaagagattgcagtccataaagagagatattgaggagtgctgcaaagatc 39458268  T
Q  323 ttgaaaataagaaaaaggaaattagggatgttggaagaattatcgaagctcgcaagaaaat 383  Q
    ||||||| ||||||||||||| ||   ||||||||||||||  ||||||||||||||||||    
T  39458269 ttgaaaacaagaaaaaggaaactatttatgttggaagaattgacgaagctcgcaagaaaat 39458329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 177 - 398
Target Start/End: Complemental strand, 39422647 - 39422426
Alignment:
Q  177 catgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaagc-aagacacaagtagaagagag 275  Q
    |||||||| ||||  |||||||||| |||||||| || ||||||  || |||||||||||||||||||| ||  ||||  || | | ||||||||||||     
T  39422647 catgtcaattgatctatcattttcctcactcaaaaaacaacttgcatttgtagaaaaatcatttgagga-atgtgaagggaaaagagaagtagaagagaa 39422549  T
Q  276 gagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaattatcgaagctcgc 375  Q
    || |||||||||||||||||||||||||||| |||||||| |||| || ||||||||||||||||||||||| ||||||||||||||||  |||||   |    
T  39422548 gatattgcagtccataaagagagatattgagaagtgctgcaaagagctggaaaataagaaaaaggaaattagtgatgttggaagaattaaggaagcatac 39422449  T
Q  376 aagaaaatgcagggaaaaattga 398  Q
    |||||||||||||| ||||||||    
T  39422448 aagaaaatgcaggggaaaattga 39422426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 177 - 394
Target Start/End: Complemental strand, 39416530 - 39416310
Alignment:
Q  177 catgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaagcaagacacaagtagaagagagg 276  Q
    ||||||||||||||||||| |||||  ||||||| || ||||||  ||  |||||||||||||||||||   ||||||  | |  ||||||||| ||| |    
T  39416530 catgtcaactgataaatcaatttccgaactcaaaaaagaacttgcatttatagaaaaatcatttgaggaacgcagaagggacatgcaagtagaaaagaag 39416431  T
Q  277 agattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaattatc---gaagctc 373  Q
    |||||||| ||||||||||||||||||||||||||||||  ||| |||||||||||| |||||||||||||  ||||||||||||||| |   |||||||    
T  39416430 agattgcattccataaagagagatattgaggagtgctgcagagaacttgaaaataagcaaaaggaaattagttatgttggaagaattaacgaagaagctc 39416331  T
Q  374 gcaagaaaatgcagggaaaaa 394  Q
     |||||||||||||| |||||    
T  39416330 acaagaaaatgcaggtaaaaa 39416310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 267 - 398
Target Start/End: Original strand, 39129487 - 39129618
Alignment:
Q  267 agaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaattatc 366  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||| |||| |||||||||||      
T  39129487 agaagagaagagattgcagtccataaagagagatattgaggagtgctccaaagagcttgaaaatatgaaaaaggaaattagtgatgctggaagaattaag 39129586  T
Q  367 gaagctcgcaagaaaatgcagggaaaaattga 398  Q
    ||||||| ||||||||| ||||| ||||||||    
T  39129587 gaagctcacaagaaaatccaggggaaaattga 39129618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 177 - 398
Target Start/End: Complemental strand, 39488348 - 39488127
Alignment:
Q  177 catgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaagcaagacacaagtagaagagagg 276  Q
    ||||||| |||| ||||||||||||   || ||| || ||||||  ||||||||||  |||||||||||   || ||| || |  |||||||||||| ||    
T  39488348 catgtcatctgagaaatcattttccttgctgaaaaaagaacttgcattggtagaaacctcatttgaggaatgcaaaaggaaaaggcaagtagaagagggg 39488249  T
Q  277 agattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaattatcgaagctcgca 376  Q
    ||| ||||||| |||||||||||| ||||||||||||   |||| ||||||||||||||||||||||||||   |||||||||||||| ||||| || |     
T  39488248 agactgcagtctataaagagagatgttgaggagtgctctaaagagcttgaaaataagaaaaaggaaattagttgtgttggaagaattaacgaagttcact 39488149  T
Q  377 agaaaatgcagggaaaaattga 398  Q
    ||||||||||||| ||||||||    
T  39488148 agaaaatgcaggggaaaattga 39488127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 262 - 398
Target Start/End: Original strand, 39151897 - 39152033
Alignment:
Q  262 caagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaa 361  Q
    ||||||||||||| |||| ||||||| ||||||||| ||||||||||  ||| | |||| |||||||||||||||||||||||||    |||||||||||    
T  39151897 caagtagaagagaagagactgcagtcaataaagagaaatattgaggaacgctccaaagagcttgaaaataagaaaaaggaaattacctgtgttggaagaa 39151996  T
Q  362 ttatcgaagctcgcaagaaaatgcagggaaaaattga 398  Q
    ||| ||||||| |||||||||||||||| ||||||||    
T  39151997 ttaacgaagcttgcaagaaaatgcaggggaaaattga 39152033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 162
Target Start/End: Complemental strand, 39422869 - 39422722
Alignment:
Q  15 tgaagatgatgatgatgatgctttatcagcaaggtttcataagaagagggatacaactacactgtcagttaagagggtattcgatgacaacaattctttg 114  Q
    ||||||||||||||||| | |||| ||||||||||||| ||||||||||||||| |  |||||| | ||||||| |||||  ||| |||||| ||| |||    
T  39422869 tgaagatgatgatgatgttcctttgtcagcaaggtttcctaagaagagggatactatcacactgcctgttaagaaggtatctgataacaacagttccttg 39422770  T
Q  115 tgtggttcgatgaagaaatccaaggtgtctccaacaacatatgatgat 162  Q
    || |||| ||||||||||||||||||||| || ||| |||||||||||    
T  39422769 tgcggtttgatgaagaaatccaaggtgtccccgacaccatatgatgat 39422722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 266 - 398
Target Start/End: Original strand, 39601994 - 39602126
Alignment:
Q  266 tagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaattat 365  Q
    |||||||||  ||||||||||||||||||| ||||||| |||||||| || |||| ||||||||||||||||||||||||||   | || || ||||| |    
T  39601994 tagaagagaatagattgcagtccataaagatagatattcaggagtgccgcaaagagcttgaaaataagaaaaaggaaattagttgttttagaggaatttt 39602093  T
Q  366 cgaagctcgcaagaaaatgcagggaaaaattga 398  Q
    ||||||||   ||||||||||||||||||||||    
T  39602094 cgaagctcatgagaaaatgcagggaaaaattga 39602126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 39416709 - 39416559
Alignment:
Q  19 gatgatgatgatgatgctttatcagcaaggtttcataagaagagggatacaactacactgtcagttaagagggtattcgatgacaacaattctttgtgtg 118  Q
    ||||||||||||| | |||| ||||||||||||  ||||||||||| | | ||||||||| || ||||||||| ||| ||| |||||||||| || |||     
T  39416709 gatgatgatgatgttcctttgtcagcaaggtttgctaagaagaggggtgctactacactgccaattaagagggcatttgataacaacaattccttatgtt 39416610  T
Q  119 gttcgatgaagaaatccaaggtgtctccaacaacatatgatgatgatgacg 169  Q
    ||| ||||||||||||||||||||| || | | ||||||||||| ||||||    
T  39416609 gtttgatgaagaaatccaaggtgtccccgaaaccatatgatgataatgacg 39416559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 277 - 394
Target Start/End: Original strand, 39123536 - 39123653
Alignment:
Q  277 agattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaattatcgaagctcgca 376  Q
    |||||||| |||||| ||||||||||||||| ||||| | ||||||||||||||| |||||||||||| ||  |||||| |||||||  |||| ||| ||    
T  39123536 agattgcactccatacagagagatattgaggggtgctccaaagatcttgaaaatatgaaaaaggaaatgagttatgttgaaagaatttacgaatctcaca 39123635  T
Q  377 agaaaatgcagggaaaaa 394  Q
    ||||||||||||||||||    
T  39123636 agaaaatgcagggaaaaa 39123653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 263 - 398
Target Start/End: Complemental strand, 39199554 - 39199419
Alignment:
Q  263 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaat 362  Q
    |||| |||||||  ||||||||||||||||||||||||| ||| ||||||||| |||| ||| |||||||||| ||  || |||| | |||| |||||||    
T  39199554 aagttgaagagaaaagattgcagtccataaagagagatactgaagagtgctgcaaagagcttcaaaataagaagaaccaagttagtgttgttagaagaat 39199455  T
Q  363 tatcgaagctcgcaagaaaatgcagggaaaaattga 398  Q
    |   |||||||||||| || |||||| |||||||||    
T  39199454 tgatgaagctcgcaaggaagtgcaggaaaaaattga 39199419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 261 - 331
Target Start/End: Original strand, 44623617 - 44623687
Alignment:
Q  261 acaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaata 331  Q
    |||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||||||| || |||||||    
T  44623617 acaagtagaagagaggcgattgcggtctataaagagagatattgagaagtgctgcgaagagctagaaaata 44623687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 335
Target Start/End: Original strand, 39214925 - 39214997
Alignment:
Q  263 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 335  Q
    ||||||| |||| |||||||||||||||||||||| || |||||||||||||  |||| ||||||||||||||    
T  39214925 aagtagaggagaagagattgcagtccataaagagatatgttgaggagtgctgtaaagagcttgaaaataagaa 39214997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 339
Target Start/End: Original strand, 39450499 - 39450575
Alignment:
Q  263 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaag 339  Q
    |||||||||| | ||||||||||||||| |||| |||||||||||| |||||| |||| ||| ||||||||||||||    
T  39450499 aagtagaagaaaagagattgcagtccatcaagacagatattgaggactgctgcaaagagcttcaaaataagaaaaag 39450575  T

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Target: chr2; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 398
Target Start/End: Complemental strand, 39495611 - 39495480
Alignment:
Q  267 agaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaattatc 366  Q
    |||||||  |||||||||||||||||||||||||||||||||| ||| | |||| |||| |||||  ||||||||||| ||   ||||| || || || |    
T  39495611 agaagaggagagattgcagtccataaagagagatattgaggagcgctccaaagagcttggaaatataaaaaaggaaatgagttttgttgaaataactaac 39495512  T
Q  367 gaagctcgcaagaaaatgcagggaaaaattga 398  Q
    ||| | |  ||||||||||||| |||||||||    
T  39495511 gaatcccataagaaaatgcaggaaaaaattga 39495480  T

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Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 337
Target Start/End: Complemental strand, 27155095 - 27154981
Alignment:
Q  223 ttggtagaaaaatcatttgaggatatcagaagcaagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatc 322  Q
    ||||||||||||| |||||| ||  ||| ||  || | ||||| |||||||   ||||||||||||||||||||||||||||||||||||| | |||| |    
T  27155095 ttggtagaaaaattatttgaagaattcaaaaagaaaagacaagaagaagaggaaagattgcagtccataaagagagatattgaggagtgctccaaagagc 27154996  T
Q  323 ttgaaaataagaaaa 337  Q
    ||| ||||| |||||    
T  27154995 ttggaaatatgaaaa 27154981  T

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Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 335
Target Start/End: Complemental strand, 39382282 - 39382213
Alignment:
Q  266 tagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 335  Q
    ||||||||| |||||| ||||||||||||||||||| ||| ||||||||| |||| ||| ||||||||||    
T  39382282 tagaagagaagagattacagtccataaagagagatactgaagagtgctgcaaagagcttcaaaataagaa 39382213  T

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Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 335
Target Start/End: Complemental strand, 39399085 - 39399013
Alignment:
Q  263 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 335  Q
    |||||||||||| |||||||||||||||||||||||||||||| || |||||  |||| |||| ||| |||||    
T  39399085 aagtagaagagaagagattgcagtccataaagagagatattgaagactgctggaaagaacttggaaaaaagaa 39399013  T

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Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 334
Target Start/End: Original strand, 39220162 - 39220233
Alignment:
Q  263 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataaga 334  Q
    |||| |||||||| ||||| ||||||||||||||||| | ||| ||||||||| |||||||| ||| |||||    
T  39220162 aagttgaagagagaagattacagtccataaagagagaaactgaagagtgctgcaaagatcttcaaattaaga 39220233  T

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Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 39391725 - 39391666
Alignment:
Q  276 gagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 335  Q
    |||||||| ||||||||||| ||||||||| ||||||||| |||| |||||| |||||||    
T  39391725 gagattgctgtccataaagaaagatattgaagagtgctgcaaagagcttgaagataagaa 39391666  T

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Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 39479224 - 39479182
Alignment:
Q  269 aagagaggagattgcagtccataaagagagatattgaggagtg 311  Q
    |||||| |||||||||||||||||||||||||||||| |||||    
T  39479224 aagagaagagattgcagtccataaagagagatattgaagagtg 39479182  T

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Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 333
Target Start/End: Original strand, 44614473 - 44614543
Alignment:
Q  263 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataag 333  Q
    ||||||||||||||  ||||| ||| |||||||||||||||||| | |||||| |||| || |||||||||    
T  44614473 aagtagaagagaggcaattgcggtctataaagagagatattgagaaatgctgcaaagagctagaaaataag 44614543  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 39161102 - 39161162
Alignment:
Q  275 ggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 335  Q
    ||||||||||||||||  ||| ||||||||| || |||||| |||| |||||| |||||||    
T  39161102 ggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaa 39161162  T

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Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 335
Target Start/End: Complemental strand, 39208092 - 39208032
Alignment:
Q  275 ggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 335  Q
    ||||||||||||||||  ||| ||||||||| || |||||| |||| |||||| |||||||    
T  39208092 ggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaa 39208032  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 333
Target Start/End: Complemental strand, 44951455 - 44951384
Alignment:
Q  262 caagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataag 333  Q
    |||||||||||||||  ||||| | | ||||||||||||||| || ||||||||||||| ||||||||||||    
T  44951455 caagtagaagagaggcaattgcggccgataaagagagatattaagaagtgctgcgaagagcttgaaaataag 44951384  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 32984770 - 32984806
Alignment:
Q  56 agaagagggatacaactacactgtcagttaagagggt 92  Q
    ||||||||||||| |||||||||||||||||||||||    
T  32984770 agaagagggatactactacactgtcagttaagagggt 32984806  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 335
Target Start/End: Original strand, 33559636 - 33559695
Alignment:
Q  276 gagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 335  Q
    ||||||||||||  |||||| ||||||||| ||||||||| |||| |||||| |||||||    
T  33559636 gagattgcagtctgtaaagaaagatattgaagagtgctgcaaagagcttgaagataagaa 33559695  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 16112428 - 16112466
Alignment:
Q  267 agaagagaggagattgcagtccataaagagagatattga 305  Q
    |||||||| || |||||||||||||||||||||||||||    
T  16112428 agaagagaagaaattgcagtccataaagagagatattga 16112466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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