View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_high_34 (Length: 348)
Name: NF3545_high_34
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 55392344 - 55392676
Alignment:
| Q |
1 |
gctacacctttctttttccttatcaaccagttctttggaattatttgggtccataaatctcaaatagtacctggaaggatattaaaaggaaatgtgacat |
100 |
Q |
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| T |
55392344 |
gctacacctttctttttccttatcaaccagttctttggaattatttgggtccataaatctcaaatagtacctggaaggatattaaaaggaaatgtgacat |
55392443 |
T |
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| Q |
101 |
atagacataaaaagaattacattttattttcatttgtatcagatgcataaaaatcctgattcaagaccacaaaactactggacttagccacaaaaccatg |
200 |
Q |
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| T |
55392444 |
atagacgtaaaaagaattacattttattttcatttgtatcagatgcataaaaatcctgaatcaagaccacaaaactactggacttagccaaaaaaccatg |
55392543 |
T |
|
| Q |
201 |
gcttagtggctcagggattactaataaaacaaaatcattcaaaatcctcccaataacttaccagcatgaaccagcccactgtggcatggtatttgtttcc |
300 |
Q |
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| T |
55392544 |
gcttagtggctcagggattactaataaaacaaaatcattcaaaatcctcccaataacttaccagcatgaaccagcccactgtggcatggtatttgtttcc |
55392643 |
T |
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| Q |
301 |
cgagtagctggtcttccggataacctatctgtg |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
55392644 |
cgagtagctggtcttccggataacctatctgtg |
55392676 |
T |
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