View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_high_39 (Length: 328)
Name: NF3545_high_39
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_high_39 |
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| [»] scaffold0132 (2 HSPs) |
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Alignment Details
Target: scaffold0132 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: scaffold0132
Description:
Target: scaffold0132; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 1488 - 1796
Alignment:
| Q |
1 |
tgtaaatggttaaatagttctgaaatcctaattatatgcattagataaacttgtgtatgtatgcaatgcagtggaaaagaaagattaaccagtgctgaac |
100 |
Q |
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| T |
1488 |
tgtaaatggttaaatagttctgaaatcctaattatatgcattagataaacttgtgtatgtatgtaatgcagtggaaaagaaagattaaccagtgttgaac |
1587 |
T |
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| Q |
101 |
ttatggatatagagtagttatgttatttacaaggacacaaaattgtaattcactaaactagctacgaaaactttgaggatttgacatgaaatcaaaaaat |
200 |
Q |
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| T |
1588 |
ttatggatatagagtagttatgttatttacaaggacacaaaattgtaattcactaaactagctacgaaaactttgaggatttgacatgaaatcaaataat |
1687 |
T |
|
| Q |
201 |
atggcattcgccaatgctgaacttatggatatatagtaccaaaactgaagacgcccagagcttgccagatggagatacaaagaaagggatcgttgtatat |
300 |
Q |
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| T |
1688 |
atggcattcgccaatgctgaacttatggatatatagtaccaaaactgaagacgctcagagcttgccagatggagatacaaagaaagggatcgttgtatat |
1787 |
T |
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| Q |
301 |
agctggaac |
309 |
Q |
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| T |
1788 |
aggtggaac |
1796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0132; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 9448 - 9756
Alignment:
| Q |
1 |
tgtaaatggttaaatagttctgaaatcctaattatatgcattagataaacttgtgtatgtatgcaatgcagtggaaaagaaagattaaccagtgctgaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
9448 |
tgtaaatggttaaatagttctgaaatcctaattatatgcattagataaacttgtgtatgtatgtaatgcagtggaaaagaaagattaaccagtgttgaac |
9547 |
T |
|
| Q |
101 |
ttatggatatagagtagttatgttatttacaaggacacaaaattgtaattcactaaactagctacgaaaactttgaggatttgacatgaaatcaaaaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9548 |
ttatggatatagagtagttatgttatttacaaggacacaaaattgtaattcactaaactagctacgaaaactttgaggatttgacatgaaatcaaataat |
9647 |
T |
|
| Q |
201 |
atggcattcgccaatgctgaacttatggatatatagtaccaaaactgaagacgcccagagcttgccagatggagatacaaagaaagggatcgttgtatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9648 |
atggcattcgccaatgctgaacttatggatatatagtaccaaaactgaagacgctcagagcttgccagatggagatacaaagaaagggatcgttgtatat |
9747 |
T |
|
| Q |
301 |
agctggaac |
309 |
Q |
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|| |||||| |
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| T |
9748 |
aggtggaac |
9756 |
T |
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