View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_high_45 (Length: 279)
Name: NF3545_high_45
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_high_45 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 11 - 264
Target Start/End: Original strand, 47498344 - 47498603
Alignment:
| Q |
11 |
agaatatttaactatcctacccttttcgtcacgtaga--------atatatattgttgaacattgaaatatctttcnnnnnnnnnccgacattgaaattc |
102 |
Q |
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| T |
47498344 |
agaatatttaactatcctacccttttcgtcacgtagattcgtagaatatatattgttgaacattgaaaatttttt---tttttttccgacattgaaattc |
47498440 |
T |
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| Q |
103 |
agtggaggagaattagtatttcttatcatttcgtaatgcagaaattaaaattgctgtttacttgactaatctatactgatattaattgattatacaaaaa |
202 |
Q |
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| T |
47498441 |
agtggaggagaattagtatttcttatcatttcgtaatgcagaaattaaaattgctgtttacttgactaatctatactgatattaattgattatacaaaaa |
47498540 |
T |
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| Q |
203 |
tgtttgaacgaatactttcaaaaatgac-ttttctacctctgctcttttaaattataattttt |
264 |
Q |
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| T |
47498541 |
tgtttgaacgaatactttcaaaaataactttttctacctctgctcttttaaattataattttt |
47498603 |
T |
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