View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3545_high_5 (Length: 616)

Name: NF3545_high_5
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3545_high_5
NF3545_high_5
[»] chr5 (8 HSPs)
chr5 (1-595)||(29021356-29021950)
chr5 (14-425)||(28673346-28673751)
chr5 (87-476)||(28695545-28695933)
chr5 (452-594)||(28661098-28661240)
chr5 (238-334)||(28662717-28662815)
chr5 (342-398)||(28662057-28662113)
chr5 (203-258)||(28532571-28532626)
chr5 (18-75)||(28532392-28532449)
[»] chr4 (13 HSPs)
chr4 (201-471)||(8186386-8186656)
chr4 (209-340)||(532587-532718)
chr4 (371-416)||(2373556-2373601)
chr4 (18-73)||(3438016-3438071)
chr4 (359-416)||(12124509-12124566)
chr4 (374-416)||(2367990-2368032)
chr4 (374-416)||(5106641-5106683)
chr4 (444-506)||(21833269-21833331)
chr4 (372-413)||(2391349-2391390)
chr4 (444-506)||(553761-553823)
chr4 (374-416)||(2363162-2363204)
chr4 (374-416)||(2518912-2518954)
chr4 (357-401)||(6007324-6007368)
[»] chr8 (7 HSPs)
chr8 (206-422)||(18314714-18314929)
chr8 (374-509)||(18318632-18318767)
chr8 (206-334)||(18318807-18318935)
chr8 (374-497)||(14004075-14004198)
chr8 (206-320)||(32151732-32151846)
chr8 (371-407)||(32151897-32151933)
chr8 (444-476)||(32151970-32152002)
[»] chr1 (1 HSPs)
chr1 (444-506)||(19467423-19467485)
[»] scaffold1155 (1 HSPs)
scaffold1155 (486-563)||(1821-1898)
[»] scaffold0345 (1 HSPs)
scaffold0345 (486-563)||(8318-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (486-563)||(30584-30661)
[»] chr7 (2 HSPs)
chr7 (19-76)||(10615269-10615326)
chr7 (373-506)||(10615644-10615777)
[»] chr3 (1 HSPs)
chr3 (203-302)||(13469872-13469968)
[»] chr6 (3 HSPs)
chr6 (201-320)||(9411886-9412005)
chr6 (382-468)||(6432773-6432859)
chr6 (18-74)||(6588694-6588750)


Alignment Details
Target: chr5 (Bit Score: 543; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Original strand, 29021356 - 29021950
Alignment:
Q  1 aagcaggcatacatataacaaatcaagacaagttaaacccttgaaactcaccaacaagtcaatgaaatgtgaagtaacttacattgcaattgcatagtcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29021356 aagcaggcatacatataacaaatcaagacaagttaaacccttgaaactcaccaacaagtcaatgaaatgtgaagtaacttacattgcaattgcatagtcg 29021455  T
Q  101 tctggatcggaggtaatggaatatgataccgtcactgttggtctcttgcggtaagcagaagcaatgcaggcaatgcttattctaggacaagaaatgacag 200  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||     
T  29021456 tctggttcggaggtaatggaatatgataccgtcactattggtctcttgcggtaagcagaagcaatgcaggcaatggttattctaggacaaaaaatgacaa 29021555  T
Q  201 taacttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaag 300  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29021556 taacttcttcgagaagcttacagttgtttataaagtggaaaagtgattggtcgttgatatagcaatgacgagagagatcaaccttgcggagtttaaaaag 29021655  T
Q  301 tgacaatgaaatagcctctaaaccatcgagtaagttactgcgatagttgatctctacaggataactaagatcaagttcttcgagcaaagggaagcaatca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  29021656 tgacaatgaaatagcctctaaaccatcgagtaagttactgcgatagttgatctttacaggataactaagatcgagttcttcgagcaaagggaagcaatca 29021755  T
Q  401 gcaatgaagaagagatgagtgctattgagggtttcaaggtggtaacaagtgagagaggtcaaagtagtaatgtttttactgaaagctcgcaaaccatctg 500  Q
    ||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29021756 gcaataagaaagagatgagtgctattgagggtttcaaggtggtaacaagtgagagaggtcaaagtagtaatgtttttgctgaaagctcgcaaaccatctg 29021855  T
Q  501 cgggaaagatatcttggtcggagaaattgagagatgtgaggttcaaagggaagcgagagatttgaaagagaagcgagtcgaggtcaccatagtag 595  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29021856 cgggaaagatatcttggtcggagaaattgagagatgtgaggttcaaagggaagcgagagatttgaaagagaagcgagtcgaggtcaccatagtag 29021950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 425
Target Start/End: Complemental strand, 28673751 - 28673346
Alignment:
Q  14 tataacaaatcaagacaagttaaacccttgaaactcaccaacaagtcaatgaaatgtgaagtaacttacattgcaattgcatagtcgtctggatcggagg 113  Q
    ||||||||||||||||||||||||||||| ||||||||||||   |||||||||||| |||||||||||||||||      ||||| ||||| ||||| |    
T  28673751 tataacaaatcaagacaagttaaaccctttaaactcaccaacggatcaatgaaatgttaagtaacttacattgca------tagtcctctggttcggaag 28673658  T
Q  114 taatggaatatgataccgtcactgttggtctcttgcggtaagcagaagcaatgcaggcaatgcttattctaggacaagaaatgacagtaacttcttcgag 213  Q
    ||||||||  ||||||||||| |||||||||||||||| ||||||||||||||||||  ||| ||| |||| ||||||||| |||  |||| ||||||||    
T  28673657 taatggaaattgataccgtcaatgttggtctcttgcggcaagcagaagcaatgcaggagatggttaatctatgacaagaaaagactataacctcttcgag 28673558  T
Q  214 aagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaagtgacaatgaaata 313  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||  |||| ||||||||  |||||||| |||||| ||||||| ||||||||||    
T  28673557 aagcttacagttgtttatcaaatggaaaagtgattggtcgttgatgtagtgatgatgagagagattaaccttgcagagtttgaaaagtggcaatgaaata 28673458  T
Q  314 gcctctaaaccatcgagtaagttactgcgatagttgatctctacaggataactaagatcaagttcttcgagcaaagggaagcaatcagcaatgaagaaga 413  Q
    ||||| | ||||||| ||||  ||||| | ||| ||| |||| | |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28673457 gcctcaacaccatcgtgtaaactactgtggtagatgaactctccgggatcactaagatcgagttcttcgagcaaagggaagcaatcagcaatgaagaaga 28673358  T
Q  414 gatgagtgctat 425  Q
    |||  |||||||    
T  28673357 gatcggtgctat 28673346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 87 - 476
Target Start/End: Complemental strand, 28695933 - 28695545
Alignment:
Q  87 caattgcatagtcgtctggatcggaggtaatggaatatgataccgtcactgttggtctcttgcggtaagcagaagcaatgcaggcaatgcttattctagg 186  Q
    |||||||||||| |||||  ||||| |||||||||  ||| ||||||| |||||||||||||||| ||||||||||||||||||  ||| ||| |||| |    
T  28695933 caattgcatagttgtctgt-tcggaagtaatggaaattgacaccgtcaatgttggtctcttgcggcaagcagaagcaatgcaggagatggttaatctatg 28695835  T
Q  187 acaagaaatgacagtaacttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttg 286  Q
    |||||||| |||  |||| |||||||||||||| ||||||||||||||||||||||||| |||| ||||||| |||  |||||||||||||  |||||||    
T  28695834 acaagaaaagactataacctcttcgagaagcttgcagttgtttatcaagtggaaaagtggttggccgttgatgtagtgatgacgagagagattaaccttg 28695735  T
Q  287 cggagtttaaaaagtgacaatgaaatagcctctaaaccatcgagtaagttactgcgatagttgatctctacaggataactaagatcaagttcttcgagca 386  Q
    | |||||| ||||||| ||||||||||||||||| ||||||| ||||| ||||| | ||| ||| ||||   |||| ||||| ||| ||||||||| |||    
T  28695734 cagagtttgaaaagtggcaatgaaatagcctctacaccatcgtgtaagctactgtggtagatgaactctctgggatcactaatatcgagttcttcgggca 28695635  T
Q  387 aagggaagcaatcagcaatgaagaagagatgagtgctattgagggtttcaaggtggtaacaagtgagagaggtcaaagtagtaatgtttt 476  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||| |||||||| |||||||||||||||||| ||| ||||||||||    
T  28695634 aagggaagcaatcagcaatgaagaagagatcagtgctatggagagttgcaaggtgggaacaagtgagagaggtcatagttgtaatgtttt 28695545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 452 - 594
Target Start/End: Complemental strand, 28661240 - 28661098
Alignment:
Q  452 agagaggtcaaagtagtaatgtttttactgaaagctcgcaaaccatctgcgggaaagatatcttggtcggagaaattgagagatgtgaggttcaaaggga 551  Q
    |||||||||||||| ||||||||||  |||||||||| |||||||| |||||||||||||| || || | ||||||||||||||||||||||||| ||||    
T  28661240 agagaggtcaaagttgtaatgttttggctgaaagctcccaaaccatgtgcgggaaagatatttttgttgcagaaattgagagatgtgaggttcaacggga 28661141  T
Q  552 agcgagagatttgaaagagaagcgagtcgaggtcaccatagta 594  Q
    ||| |||||||||||| ||||| ||||| |||| ||| |||||    
T  28661140 agctagagatttgaaatagaagtgagtcaaggttaccgtagta 28661098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 238 - 334
Target Start/End: Complemental strand, 28662815 - 28662717
Alignment:
Q  238 gaaaagtgattggtcgttgatatagcaatgacgagagagaac--aaccttgcggagtttaaaaagtgacaatgaaatagcctctaaaccatcgagtaag 334  Q
    ||||||||||||||||||||| ||   |||||||||||||    |||||| | |||||| |||||||||||||||||||| ||||||||||||||||||    
T  28662815 gaaaagtgattggtcgttgatgtattgatgacgagagagagattaaccttccagagtttgaaaagtgacaatgaaatagcatctaaaccatcgagtaag 28662717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 398
Target Start/End: Complemental strand, 28662113 - 28662057
Alignment:
Q  342 gatagttgatctctacaggataactaagatcaagttcttcgagcaaagggaagcaat 398  Q
    ||||||||| |||| | |||| ||||||||| |||||||||||||||||||||||||    
T  28662113 gatagttgaactcttcgggatcactaagatcgagttcttcgagcaaagggaagcaat 28662057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 28532571 - 28532626
Alignment:
Q  203 acttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgat 258  Q
    ||||||| |||||||||||||||| | | |||||||||||||||||||| ||||||    
T  28532571 acttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgat 28532626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 28532392 - 28532449
Alignment:
Q  18 acaaatcaagacaagttaaacccttgaaactcaccaacaagtcaatgaaatgtgaagt 75  Q
    ||||| |||||||||| ||||||||||||||||||||  ||||||| | |||||||||    
T  28532392 acaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaataatatgtgaagt 28532449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 201 - 471
Target Start/End: Complemental strand, 8186656 - 8186386
Alignment:
Q  201 taacttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaag 300  Q
    |||| ||||||||| ||||||| || |||| |||||| |||||  ||| |||||||||||||  ||||  ||| |||  ||||||||| ||||| |||||    
T  8186656 taacctcttcgagatgcttacaattctttaacaagtgaaaaagcaatttgtcgttgatatagttatgattagatagattaaccttgcgaagtttgaaaag 8186557  T
Q  301 tgacaatgaaatagcctctaaaccatcgagtaagttactgcgatagttgatctctacaggataactaagatcaagttcttcgagcaaagggaagcaatca 400  Q
    || |||||||| |||||| |  ||||| |  ||| ||||| ||| ||||| ||||  ||| | ||| ||||| |||||||| || ||||| || |||||     
T  8186556 tgccaatgaaagagcctcaactccatcaaagaagatactgagattgttgaactctttagggttactgagatcgagttcttctaggaaaggaaaacaatcg 8186457  T
Q  401 gcaatgaagaagagatgagtgctattgagggtttcaaggtggtaacaagtgagagaggtcaaagtagtaat 471  Q
    || |||| |||||  | |||||||||||  | ||||| || | |||| ||||| ||||||||||| |||||    
T  8186456 gcgatgaggaagatgtcagtgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaat 8186386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 209 - 340
Target Start/End: Original strand, 532587 - 532718
Alignment:
Q  209 tcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaagtgacaatg 308  Q
    |||||||||||||| || || | |||||||||||| |||||||||||||| |||  ||||  ||| |||  ||||||||||||||| |||||||| ||||    
T  532587 tcgagaagcttacaatttttgaacaagtggaaaagcgattggtcgttgatgtagtcatgagtagaaagattaaccttgcggagtttgaaaagtgataatg 532686  T
Q  309 aaatagcctctaaaccatcgagtaagttactg 340  Q
    ||| || ||| | ||||| ||| ||| |||||    
T  532687 aaagagtctccacaccatggagaaagctactg 532718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 371 - 416
Target Start/End: Complemental strand, 2373601 - 2373556
Alignment:
Q  371 tcaagttcttcgagcaaagggaagcaatcagcaatgaagaagagat 416  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  2373601 tcaagttcttcgagcaaagggaaacaatcagcaatgaagaagagat 2373556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 3438071 - 3438016
Alignment:
Q  18 acaaatcaagacaagttaaacccttgaaactcaccaacaagtcaatgaaatgtgaa 73  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||||||| ||||||    
T  3438071 acaaatcaagacaagttaatcccttcagactcaccaacaagtcaatgaagtgtgaa 3438016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 12124509 - 12124566
Alignment:
Q  359 ggataactaagatcaagttcttcgagcaaagggaagcaatcagcaatgaagaagagat 416  Q
    |||||||| || ||||||||||| || |||||||| ||||||||||||||||||||||    
T  12124509 ggataactgaggtcaagttcttctagtaaagggaaacaatcagcaatgaagaagagat 12124566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 2368032 - 2367990
Alignment:
Q  374 agttcttcgagcaaagggaagcaatcagcaatgaagaagagat 416  Q
    ||||||||||| |||||||| ||||||||||||||||||||||    
T  2368032 agttcttcgagtaaagggaaacaatcagcaatgaagaagagat 2367990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 5106683 - 5106641
Alignment:
Q  374 agttcttcgagcaaagggaagcaatcagcaatgaagaagagat 416  Q
    ||||||||||| |||||||| ||||||||||||||||||||||    
T  5106683 agttcttcgagtaaagggaaacaatcagcaatgaagaagagat 5106641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 506
Target Start/End: Complemental strand, 21833331 - 21833269
Alignment:
Q  444 aacaagtgagagaggtcaaagtagtaatgtttttactgaaagctcgcaaaccatctgcgggaa 506  Q
    |||||||||||||||||||||||||||||||||     ||| ||||||| |||||||||||||    
T  21833331 aacaagtgagagaggtcaaagtagtaatgttttgtgcaaaaactcgcaacccatctgcgggaa 21833269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 372 - 413
Target Start/End: Complemental strand, 2391390 - 2391349
Alignment:
Q  372 caagttcttcgagcaaagggaagcaatcagcaatgaagaaga 413  Q
    ||||||||||||| ||||||||||||||| ||||||||||||    
T  2391390 caagttcttcgagtaaagggaagcaatcaacaatgaagaaga 2391349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 444 - 506
Target Start/End: Original strand, 553761 - 553823
Alignment:
Q  444 aacaagtgagagaggtcaaagtagtaatgtttttactgaaagctcgcaaaccatctgcgggaa 506  Q
    |||| ||||||||||||||||| ||||||||||    |||||||||||| |||| ||||||||    
T  553761 aacaggtgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgcgggaa 553823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 2363204 - 2363162
Alignment:
Q  374 agttcttcgagcaaagggaagcaatcagcaatgaagaagagat 416  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||    
T  2363204 agttcgtcgaggaaagggaaacaatcagcaatgaagaagagat 2363162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 374 - 416
Target Start/End: Original strand, 2518912 - 2518954
Alignment:
Q  374 agttcttcgagcaaagggaagcaatcagcaatgaagaagagat 416  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||    
T  2518912 agttctttgagtaaagggaaacaatcagcaatgaagaagagat 2518954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 357 - 401
Target Start/End: Original strand, 6007324 - 6007368
Alignment:
Q  357 caggataactaagatcaagttcttcgagcaaagggaagcaatcag 401  Q
    |||| ||||||||||||||||||||||| ||||| || |||||||    
T  6007324 cagggtaactaagatcaagttcttcgagtaaaggaaaacaatcag 6007368  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 422
Target Start/End: Complemental strand, 18314929 - 18314714
Alignment:
Q  206 tcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaagtgaca 305  Q
    |||||||||||||||||||| || | |||||||||||| ||||| |||||||| ||| |||||  || || |  |||||| |||||||| |||||||  |    
T  18314929 tcttcgagaagcttacagttcttgaacaagtggaaaagcgattgatcgttgatgtagtaatgatcagcgaaattaacctttcggagtttgaaaagtgtga 18314830  T
Q  306 atgaaatagcctctaaaccatcgagtaagttactgcgatagttgatctctacaggataactaagatcaagttcttcgagcaaagggaagcaatcagcaat 405  Q
     ||||| | ||||||  |||| ||||||| |     |||  || | ||||   || |||||||| || |||||||||||||||||||| |||||||||||    
T  18314829 -tgaaagaacctctattccattgagtaagctttcatgattttttaactctttggggtaactaaggtcgagttcttcgagcaaagggaaacaatcagcaat 18314731  T
Q  406 gaagaagagatgagtgc 422  Q
    || |||||||| |||||    
T  18314730 gaggaagagatcagtgc 18314714  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 509
Target Start/End: Complemental strand, 18318767 - 18318632
Alignment:
Q  374 agttcttcgagcaaagggaagcaatcagcaatgaagaagagatgagtgctattgagggtttcaaggtggtaacaagtgagagaggtcaaagtagtaatgt 473  Q
    |||||||| || |||||||| ||||| ||||||| |||||||| ||||||||||||   || ||||    |||| ||||| ||||||||||| ||||| |    
T  18318767 agttcttcaaggaaagggaaacaatctgcaatgaggaagagataagtgctattgagacattgaaggccagaacatgtgagtgaggtcaaagttgtaatat 18318668  T
Q  474 ttttactgaaagctcgcaaaccatctgcgggaaaga 509  Q
    |||| | |||| ||||||  ||||| ||||||||||    
T  18318667 ttttgcagaaaactcgcagcccatccgcgggaaaga 18318632  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 334
Target Start/End: Complemental strand, 18318935 - 18318807
Alignment:
Q  206 tcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaagtgaca 305  Q
    |||||||||||||| ||||| || | |||||||| ||| ||||| ||| ||||||||  ||||| || |||| ||||||| ||||||||  ||||||  |    
T  18318935 tcttcgagaagcttccagttcttgaacaagtggataagcgattgatcggtgatatagtgatgaccagtgagatcaacctttcggagtttggaaagtgcta 18318836  T
Q  306 atgaaatagcctctaaaccatcgagtaag 334  Q
    | |||| | ||||||  ||||||||||||    
T  18318835 aagaaagaacctctactccatcgagtaag 18318807  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 497
Target Start/End: Original strand, 14004075 - 14004198
Alignment:
Q  374 agttcttcgagcaaagggaagcaatcagcaatgaagaagagatgagtgctattgagggtttcaaggtggtaacaagtgagagaggtcaaagtagtaatgt 473  Q
    |||||||| |||||||| || |||||||||||||    ||||| ||||||||| || |  | ||||| | ||||| | || ||||||||||| |||||||    
T  14004075 agttcttctagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgt 14004174  T
Q  474 ttttactgaaagctcgcaaaccat 497  Q
    | | |  |||||||||||||||||    
T  14004175 tctgagagaaagctcgcaaaccat 14004198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 206 - 320
Target Start/End: Original strand, 32151732 - 32151846
Alignment:
Q  206 tcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaagtgaca 305  Q
    |||||||||||||| |||||||| | |||||||||||| ||||| || || ||||||  |||||  | ||||  |||||| | ||||||| |||||| |     
T  32151732 tcttcgagaagcttccagttgttgaacaagtggaaaagcgattgatctttaatatagtgatgacttgtgagattaaccttccagagtttataaagtgccg 32151831  T
Q  306 atgaaatagcctcta 320  Q
     ||||| ||||||||    
T  32151832 ttgaaagagcctcta 32151846  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 371 - 407
Target Start/End: Original strand, 32151897 - 32151933
Alignment:
Q  371 tcaagttcttcgagcaaagggaagcaatcagcaatga 407  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  32151897 tcaagttcttcgagcaaagggaaacaatcggcaatga 32151933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 444 - 476
Target Start/End: Original strand, 32151970 - 32152002
Alignment:
Q  444 aacaagtgagagaggtcaaagtagtaatgtttt 476  Q
    |||||||||||||||||||||| ||||||||||    
T  32151970 aacaagtgagagaggtcaaagttgtaatgtttt 32152002  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 506
Target Start/End: Complemental strand, 19467485 - 19467423
Alignment:
Q  444 aacaagtgagagaggtcaaagtagtaatgtttttactgaaagctcgcaaaccatctgcgggaa 506  Q
    |||||||||||||||||||||| ||||| |||| | ||||| ||||||| |||| ||||||||    
T  19467485 aacaagtgagagaggtcaaagttgtaatattttgagtgaaaactcgcaacccatttgcgggaa 19467423  T

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Target: scaffold1155 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 486 - 563
Target Start/End: Complemental strand, 1898 - 1821
Alignment:
Q  486 ctcgcaaaccatctgcgggaaagatatcttggtcggagaaattgagagatgtgaggttcaaagggaagcgagagattt 563  Q
    ||||||| |||||||||||||  ||   ||||| ||||| |||||| |||||||||||||| ||||| ||||||||||    
T  1898 ctcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgagagattt 1821  T

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Target: scaffold0345 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 486 - 563
Target Start/End: Original strand, 8318 - 8395
Alignment:
Q  486 ctcgcaaaccatctgcgggaaagatatcttggtcggagaaattgagagatgtgaggttcaaagggaagcgagagattt 563  Q
    ||||||| |||||||||||||  ||   ||||| ||||| |||||| |||||||||||||| ||||| ||||||||||    
T  8318 ctcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgagagattt 8395  T

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Target: scaffold0105 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 486 - 563
Target Start/End: Complemental strand, 30661 - 30584
Alignment:
Q  486 ctcgcaaaccatctgcgggaaagatatcttggtcggagaaattgagagatgtgaggttcaaagggaagcgagagattt 563  Q
    ||||||| |||||||||||||  ||   ||||| ||||| |||||| |||||||||||||| ||||| ||||||||||    
T  30661 ctcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgagagattt 30584  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 10615269 - 10615326
Alignment:
Q  19 caaatcaagacaagttaaacccttgaaactcaccaacaagtcaatgaaatgtgaagta 76  Q
    ||||||||||||||| || ||||| |||||||||||  ||||||| ||||||||||||    
T  10615269 caaatcaagacaagtcaagcccttcaaactcaccaatgagtcaataaaatgtgaagta 10615326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 506
Target Start/End: Original strand, 10615644 - 10615777
Alignment:
Q  373 aagttcttcgagcaaagggaagcaatcagcaatgaagaagagatgagtgctattgagggtttcaaggtggtaacaagtgagagaggtcaaagtagtaatg 472  Q
    |||||||||||| |||||||| || || ||||| | ||| |||| | | ||||||| | |  | | |||| |||||||||||||||||||||| |||||     
T  10615644 aagttcttcgagtaaagggaaacattctgcaataaggaacagatcactactattgaagttagcgatgtgggaacaagtgagagaggtcaaagttgtaatc 10615743  T
Q  473 tttttactgaaagctcgcaaaccatctgcgggaa 506  Q
    ||||    ||||||||| || |||| ||||||||    
T  10615744 ttttgggagaaagctcgtaacccatttgcgggaa 10615777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 203 - 302
Target Start/End: Complemental strand, 13469968 - 13469872
Alignment:
Q  203 acttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaagtg 302  Q
    |||||||||||||||||||||||||  |  ||||||||||||||| ||| |||  ||||| ||  || ||| |||  |||||||||||||||||||||||    
T  13469968 acttcttcgagaagcttacagttgtggaataagtggaaaagtgataggttgtt--tataggaa-aactagaaagattaaccttgcggagtttaaaaagtg 13469872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 320
Target Start/End: Original strand, 9411886 - 9412005
Alignment:
Q  201 taacttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaag 300  Q
    |||| |||| ||||||||||||||| || | ||||| ||| ||||||  ||||||||| |||  ||||| |||||||  || ||||  |||||| |||||    
T  9411886 taacctcttggagaagcttacagttcttaaacaagttgaagagtgatgtgtcgttgatgtagtgatgaccagagagattaatcttggtgagtttgaaaag 9411985  T
Q  301 tgacaatgaaatagcctcta 320  Q
    || |||||||| || |||||    
T  9411986 tgtcaatgaaagagtctcta 9412005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 468
Target Start/End: Original strand, 6432773 - 6432859
Alignment:
Q  382 gagcaaagggaagcaatcagcaatgaagaagagatgagtgctattgagggtttcaaggtggtaacaagtgagagaggtcaaagtagt 468  Q
    |||||||||||| ||||| |||||||  ||||| |||| |||||| || |  | || |||| ||||| |||||||||||||||||||    
T  6432773 gagcaaagggaaacaatcggcaatgagtaagaggtgagagctattaagagaatgaatgtgggaacaattgagagaggtcaaagtagt 6432859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 6588750 - 6588694
Alignment:
Q  18 acaaatcaagacaagttaaacccttgaaactcaccaacaagtcaatgaaatgtgaag 74  Q
    ||||| |||||||||| |||| ||| |||||||||||  ||||||| ||||||||||    
T  6588750 acaaaccaagacaagtcaaactcttcaaactcaccaatgagtcaattaaatgtgaag 6588694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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