View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_high_50 (Length: 259)
Name: NF3545_high_50
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 55695280 - 55695047
Alignment:
| Q |
17 |
tgctgattctgtttcagtagtttctttagcctcttcagctgatacttcctctttcacttcgaccttttcaggttccgcgttctctacctctggcttggct |
116 |
Q |
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| T |
55695280 |
tgctgattctgtttcagtagtttctttagcctcttcagctgatacttcctctttcacttcgactttttcaggttccgggttctctacctctggcttggct |
55695181 |
T |
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| Q |
117 |
tcctcagttacttgtgtactctcagcttcaactggaacttcagtttctcctttctccactgctactacttcttcggtggtggccggttctgaagtgggaa |
216 |
Q |
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| T |
55695180 |
tcctgggttacttgtgtactctcagcttcaacgggaacttcagtttcttcattctccactgctactacttcttcggtggtggctggttctgaagcaggaa |
55695081 |
T |
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| Q |
217 |
cctcagagccc---ggtgttgtttcctcgacctt |
247 |
Q |
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| T |
55695080 |
cctcggaggccggtggtgttgtttcctcgacctt |
55695047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 55695368 - 55695284
Alignment:
| Q |
1 |
ctggtactgctatggctgctgattctgtttcagtagtttctttagcctcttcagctgatacttcctctttcacttcgaccttttc |
85 |
Q |
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||||| ||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |
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| T |
55695368 |
ctggtgctgctattgctgctgattctatttcagtagtttctttagcctcttcagttgatacttcctcttttgcttcgactttttc |
55695284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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