View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_high_51 (Length: 254)
Name: NF3545_high_51
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_high_51 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 31085251 - 31085484
Alignment:
| Q |
1 |
aggaccataggaaatcgaccaatgtaagcatcagcaagaaatccacctattagaggcatcaaggttgttgttcctgcccaatagtttacatcctttgctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
31085251 |
aggaccataggaaatcgaccaatgtaagcatcagcaagaaatccacctattagaggcatcaaggttgttgttcctgaccaatagtttacattctttgctg |
31085350 |
T |
|
| Q |
101 |
cagttttgaggtcttcatgcatcaccttagtaaggtatgatataagatttgcagcaattccaaagaagcttaccctttcactaaattcaattgctgcacc |
200 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31085351 |
cagttttaagatcttcatgcatcaccttagtaaggtatgatataagatttgcagctattccaaagaagcttaccctttcactaaattcaattgctgcacc |
31085450 |
T |
|
| Q |
201 |
acatagaaattaacataatcaccaagtagggatg |
234 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |
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| T |
31085451 |
acatagaaattaacataatcatcaagtagggatg |
31085484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 31067954 - 31068157
Alignment:
| Q |
1 |
aggaccataggaaatcgaccaatgtaagcatcagcaagaaatccacctattagaggcatcaaggttgttgttcctgcccaatagtttacatcctttgctg |
100 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31067954 |
aggatcataggaaatcgaccagtgtaagcatcagcaagaaatccaccaattagaggcatcaaggttgttgttcctgaccaatagtttacatcctttgctg |
31068053 |
T |
|
| Q |
101 |
cagttttgaggtcttcatgcatcaccttagtaaggtatgatataagatttgcagcaattccaaagaagcttaccctttcactaaattcaattgctgcacc |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31068054 |
cagttttgaggtcttcatgcatcaccttagttaggtatgatataagatttgcagctattccaaagaagcttaccctttcactaaattcaattgctgcacc |
31068153 |
T |
|
| Q |
201 |
acat |
204 |
Q |
| |
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|||| |
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| T |
31068154 |
acat |
31068157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 31059230 - 31059367
Alignment:
| Q |
2 |
ggaccataggaaatcgaccaatgtaagcatcagcaagaaatccacctattagaggcatcaaggttgttgttcctgcccaatagtttacatcctttgctgc |
101 |
Q |
| |
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|||||||| ||||||||||| | || |||||||||| |||||| |||| |||||||| || |||||| |||| ||| |||||||| || || || |
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| T |
31059230 |
ggaccatatgaaatcgaccagtatatgcatcagcaataaatcctcctaccagaggcattaaagttgttactcctatccaggtgtttacatttttagcagc |
31059329 |
T |
|
| Q |
102 |
agttttgaggtcttcatgcatcaccttagtaaggtatg |
139 |
Q |
| |
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|||||||| |||||||| ||||| | ||| ||||||| |
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| T |
31059330 |
tgttttgagatcttcatgaatcacttcagtcaggtatg |
31059367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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