View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_high_59 (Length: 247)
Name: NF3545_high_59
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_high_59 |
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| [»] scaffold0035 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 11164756 - 11164525
Alignment:
| Q |
8 |
agaaattaaaagaacaaaatgaatgagcagaaactaacctgttaatgatggatactttcaattataagaaaaaggccacggcaacagaacagaagtgcag |
107 |
Q |
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| T |
11164756 |
agaaattaaaagaacaaaatgaatgagcagaaactaacctgttaatgatgggtactttcaattataagaaaaaggccacggcaacagaacagaagtgcag |
11164657 |
T |
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| Q |
108 |
caacaatatgaagtaacaggacagcagcgaagcacaacaattacaagcaattggaactgaatgaaactcc--------aattgaaagtgaaatgaacgga |
199 |
Q |
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| T |
11164656 |
caacaatatgaagtaacaggacagcagcgaagcacaacaattacaagcaattggaattgaatgaaactccaattctccaattgaaagtgaaatgaacgga |
11164557 |
T |
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| Q |
200 |
cggtgcagccaggaatttgaagaaatacacac |
231 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
11164556 |
cggtgcagccaggaatttgaagaaatacacac |
11164525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 15941660 - 15941429
Alignment:
| Q |
8 |
agaaattaaaagaacaaaatgaatgagcagaaactaacctgttaatgatggatactttcaattataagaaaaaggccacggcaacagaacagaagtgcag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
15941660 |
agaaattaaaagaacaaaatgaatgagcagaaactaacctgttaatgatggatactttcaattataagaaaaaggccatggcaatagaacagaagtgcag |
15941561 |
T |
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| Q |
108 |
caacaatatgaagtaacaggacagcagcgaagcacaacaattacaagcaattggaactgaatgaaactcc--------aattgaaagtgaaatgaacgga |
199 |
Q |
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| T |
15941560 |
caacaagatgaagtaacaggacagcagcgaagcacaacaattacaagcaattggaattgaatgaaactccaattctccaattgaaagtgaaatgaacgga |
15941461 |
T |
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| Q |
200 |
cggtgcagccaggaatttgaagaaatacacac |
231 |
Q |
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| T |
15941460 |
cggtgcagccaggaatttgaagaaatacacac |
15941429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 15933318 - 15933087
Alignment:
| Q |
8 |
agaaattaaaagaacaaaatgaatgagcagaaactaacctgttaatgatggatactttcaattataagaaaaaggccacggcaacagaacagaagtgcag |
107 |
Q |
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| T |
15933318 |
agaaattaaaagaacaaaatgaatgagcagaaactaacctattaatgatggatactttcaattataagaaaaaggccacagcaacagaacagaagtgcaa |
15933219 |
T |
|
| Q |
108 |
caacaatatgaagtaacaggacagcagcgaagcacaacaattacaagcaattggaactgaatgaaactcc--------aattgaaagtgaaatgaacgga |
199 |
Q |
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| T |
15933218 |
caacaagatgaagtaacaggacagcagcgaagcacaacaattacaagcaattggaattgaatgaaactccaattctccaattgaaagtgaaatgaacgga |
15933119 |
T |
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| Q |
200 |
cggtgcagccaggaatttgaagaaatacacac |
231 |
Q |
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| T |
15933118 |
cggtgcagccaggaatttgaagaaatacacac |
15933087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 34657726 - 34657519
Alignment:
| Q |
8 |
agaaattaaaagaacaaaatgaatgagcagaaactaacctgttaatgatggatactttcaattataagaaaaaggccacggcaacagaacagaagtgcag |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34657726 |
agaaattaaaagaacaaaatgaatgagcagaaactaacctgttaatgatgggtactttcaattataagaaaaaggccacggcaacagaacagaagtgcag |
34657627 |
T |
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| Q |
108 |
caacaatatgaagtaacaggacagcagcgaagcacaacaattacaagcaattggaactgaatgaaactccaattgaaagtgaaatgaacggacggtgcag |
207 |
Q |
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| T |
34657626 |
caacaatatgaagtaacaggacagcagcgaagcacaacaattacaagcaattgg----------------aattgaaagtgaaatgaacggacggtgcag |
34657543 |
T |
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| Q |
208 |
ccaggaatttgaagaaatacacac |
231 |
Q |
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| T |
34657542 |
ccaggaatttgaagaaatacacac |
34657519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 87505 - 87560
Alignment:
| Q |
25 |
aatgaatgagcagaaactaacctgttaatgatggatactttcaattataagaaaaa |
80 |
Q |
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|||||||||||||||||||||||||| ||||||| | ||||||||| ||| ||||| |
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| T |
87505 |
aatgaatgagcagaaactaacctgttgatgatgggtgctttcaattgtaaaaaaaa |
87560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 97199 - 97254
Alignment:
| Q |
25 |
aatgaatgagcagaaactaacctgttaatgatggatactttcaattataagaaaaa |
80 |
Q |
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|||||||||||||||||||||||||| ||||||| | ||||||||| ||| ||||| |
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| T |
97199 |
aatgaatgagcagaaactaacctgttgatgatgggtgctttcaattgtaaaaaaaa |
97254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 18477338 - 18477409
Alignment:
| Q |
10 |
aaattaaaagaacaaaatg----aatgagcagaaactaacctgttaatgatggatactttcaattataagaa |
77 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||| || |||| | |||||||||||||||| |
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| T |
18477338 |
aaattaaaagaacaaaatgaatgaatgagcataaactaacctgtttataatgggtgctttcaattataagaa |
18477409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 18487434 - 18487505
Alignment:
| Q |
10 |
aaattaaaagaacaaaatg----aatgagcagaaactaacctgttaatgatggatactttcaattataagaa |
77 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||| || |||| | |||||||||||||||| |
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| T |
18487434 |
aaattaaaagaacaaaatgaatgaatgagcataaactaacctgtttataatgggtgctttcaattataagaa |
18487505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 7588755 - 7588791
Alignment:
| Q |
141 |
acaacaattacaagcaattggaactgaatgaaactcc |
177 |
Q |
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| T |
7588755 |
acaacaattacaagcaattggaattgaatgaaactcc |
7588791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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