View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_high_60 (Length: 246)
Name: NF3545_high_60
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_high_60 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 2391358 - 2391591
Alignment:
| Q |
1 |
ttgttgattgcttccctttacttgaagaacttgttctcaaggaaacagactgcactgattacacttctgctaggaagttcgattttgtgctagatgaaga |
100 |
Q |
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| T |
2391358 |
ttgttgattgcttccctttactcgaagaacttgttctcaaggaaacagactgcagtgattacacttctgctaggaagttcgattttgtgctagatgaaga |
2391457 |
T |
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| Q |
101 |
taatcattttttggcacttcccaaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgacct |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391458 |
taataattttttggcacttcccaaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgacct |
2391557 |
T |
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| Q |
201 |
ttcagaggagaagaataacctagatggtgatgat |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
2391558 |
ttcagaggagaagaataacctagatggtgatgat |
2391591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 82 - 234
Target Start/End: Original strand, 2382915 - 2383069
Alignment:
| Q |
82 |
attttgtgctagatgaagataatcattttttggcacttcccaaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatct |
181 |
Q |
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| T |
2382915 |
attttgtgctagatgatgataatcaatttttggcacttcccaaactccgaaagattaatttgtatggtaattccatcgatagccaaattattaattatct |
2383014 |
T |
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| Q |
182 |
ccacagcaaccctcgaccttt--cagaggagaagaataacctagatggtgatgat |
234 |
Q |
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| T |
2383015 |
tcgcaaaaaccgtggacctttcacagaggagaagaataacttagatggtaatgat |
2383069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 81 - 234
Target Start/End: Original strand, 2380558 - 2380713
Alignment:
| Q |
81 |
gattttgtgctagatgaagataatcattttttggcacttcccaaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatc |
180 |
Q |
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||||||| ||||||||| |||||| | ||||| |||||||| ||||||||||||||||||||||||||| | ||||||||||||| ||||| |||||| |
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| T |
2380558 |
gattttgagctagatgatgataataaatttttagcacttccaaaactccgaaagattagtttgtatggtaactccatcgatagccaaattattaattatc |
2380657 |
T |
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| Q |
181 |
tccacagcaaccctcgacctttca--gaggagaagaataacctagatggtgatgat |
234 |
Q |
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||| || |||| | ||||||||| ||||||||||||||| |||||||| ||||| |
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| T |
2380658 |
tccgcaaaaaccgtggacctttcacggaggagaagaataacttagatggtaatgat |
2380713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 235
Target Start/End: Original strand, 2381814 - 2381928
Alignment:
| Q |
123 |
aaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgaccttt--cagaggagaagaataacc |
220 |
Q |
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||||||||||||||||||||| |||| | |||| ||| ||||||||||| ||||||||| || ||||| | ||||||| ||||| ||||||||||| |
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| T |
2381814 |
aaactccgaaagattagtttgcgtggtatttacattgatcgccaatttattaattatctccgcaacaaccgtggacctttcacagagtagaagaataact |
2381913 |
T |
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| Q |
221 |
tagatggtgatgatg |
235 |
Q |
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|||||||| |||||| |
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| T |
2381914 |
tagatggtaatgatg |
2381928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2381730 - 2381777
Alignment:
| Q |
1 |
ttgttgattgcttccctttacttgaagaacttgttctcaaggaaacag |
48 |
Q |
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|||| ||||||||||||||||| |||||||| ||||||||| |||||| |
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| T |
2381730 |
ttgtcgattgcttccctttactcgaagaactcgttctcaagaaaacag |
2381777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 2380470 - 2380512
Alignment:
| Q |
5 |
tgattgcttccctttacttgaagaacttgttctcaaggaaaca |
47 |
Q |
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| T |
2380470 |
tgattgcttcccttcacttgaagtactcgttctcaaggaaaca |
2380512 |
T |
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