View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_high_61 (Length: 244)
Name: NF3545_high_61
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_high_61 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 4175942 - 4176174
Alignment:
| Q |
8 |
agaagaagaaggagaagggagtaatgttaaggtggaacacaattgttgcgtgtgtatggtgagggataaaggtgcagcgtttataccatgtggacacacg |
107 |
Q |
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| T |
4175942 |
agaaggagaaggagaagggagtaatgttaaggtggaacacaattgttgcgtgtgtatggtgagggataaaggtgcagcgtttataccatgtggacacacg |
4176041 |
T |
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| Q |
108 |
ttttgcaggatgtgttcaagagagctttgggttagtagagggaattgtcctctttgcaatcattttattttagaagttcttgatattttctgattataat |
207 |
Q |
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| T |
4176042 |
ttttgcaggatgtgttcaagagagctttgggttagtagagggaattgtcctctttgcaatcattttattttagaagttcttgatattttctgattataa- |
4176140 |
T |
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| Q |
208 |
aattaattatcataatcataattattattcatttttc |
244 |
Q |
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| T |
4176141 |
---taattatcataatcataattattattcatttttc |
4176174 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 200
Target Start/End: Original strand, 55518567 - 55518692
Alignment:
| Q |
75 |
aaaggtgcagcgtttataccatgtggacacacgttttgcaggatgtgttcaagagagctttgggttagtagagggaattgtcctctttgcaatcatttta |
174 |
Q |
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| T |
55518567 |
aaaggtgcagcgttcataccgtgtggacacactttttgcagagtgtgttcaagggaactgtggttgaatcgaggaaattgtcccctttgtaatcgttcta |
55518666 |
T |
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| Q |
175 |
ttttagaagttcttgatattttctga |
200 |
Q |
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| T |
55518667 |
ttctcgagattctcgatattttctga |
55518692 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 8902901 - 8902983
Alignment:
| Q |
51 |
tgttgcgtgtgtatggtgagggataaaggtgcagcgtttataccatgtggacacacgttttgcaggatgtgttcaagagagct |
133 |
Q |
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| T |
8902901 |
tgttgtgtgtgcatggggaggaataaaggtgcggcgtttattccatgtggacatactttttgcagggtttgttctagggagct |
8902983 |
T |
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