View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3545_high_65 (Length: 241)
Name: NF3545_high_65
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_high_65 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 18927148 - 18927370
Alignment:
| Q |
1 |
ccctcaatgaatcaagtggttgtgagtttggagtctgtgttgcagttggtggtgagtgacgaagatagtcagtttggtatgaccaaaaaagagagaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18927148 |
ccctcaatgaatcaagtggttgtgagtttggagtctgtgttgcagttggtggtgagtgacgaagatagccagtttggtatgaccaaaaaagagagaacat |
18927247 |
T |
|
| Q |
101 |
gtatgaaaggtctttgcttctcgaaatttatgagtgataaagggagtgagctgcattttgcgagatcccacaccttgaaggagagcaatgtctcggcgag |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18927248 |
gtatgaaaggtctatgcttctcgaaatttatgagtgataaagggagtgaactgcattttgcgagatcccacaccttgaaggagagcaatgtctcggcgag |
18927347 |
T |
|
| Q |
201 |
ggcaagtgatcatgaacaccctt |
223 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
18927348 |
ggcaagtactcatgaacaccctt |
18927370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 4676697 - 4676514
Alignment:
| Q |
40 |
ttgcagttggtggtgagtgacgaagatagtcagtttggtatgaccaaaaaagagagaacatgtatgaaaggtctttgcttctcgaaatttatgagtgata |
139 |
Q |
| |
|
||||||||| ||||||||| ||||||||| || ||||||||| || |||| ||||||||||||||||||||||| || |||||| |||||||||||||| |
|
|
| T |
4676697 |
ttgcagttgatggtgagtggcgaagatagccaatttggtatggccgaaaaggagagaacatgtatgaaaggtctatggttctcgcaatttatgagtgatg |
4676598 |
T |
|
| Q |
140 |
aagggagtgagctgcattttgcgagatcccacaccttgaaggagagcaatgtctcggcgagggcaagtgatcatgaacaccctt |
223 |
Q |
| |
|
| | |||| | |||||||| || ||||||||||||| |||||||||| ||||| | ||||||||| |||||||| ||||| |
|
|
| T |
4676597 |
atgtgagtaaactgcatttcgcaagatcccacacctataaggagagcacagtctctacaagggcaagtcctcatgaactccctt |
4676514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 4642411 - 4642225
Alignment:
| Q |
1 |
ccctcaatgaatcaagtggttgtgagtttggagtctgtgttgcagttggtggtgagtgacgaagatagtcagtttggtatgaccaaaaaagagagaacat |
100 |
Q |
| |
|
|||||||||| ||||||||||| | |||| |||| || |||||| |||||||||||||| |||||| | || ||| |||| ||||||||| ||||| |
|
|
| T |
4642411 |
ccctcaatgagtcaagtggttgggggtttagagtttgcgttgcaattggtggtgagtgaggaagattacgacgtttgtacgacccaaaaagagataacat |
4642312 |
T |
|
| Q |
101 |
gtatgaaaggtctttgcttctcgaaatttatgagtgataaagggagtgagctgcattttgcgagatcccacaccttgaaggagagca |
187 |
Q |
| |
|
| || ||||| || | |||||| ||| |||||||||| ||||||||| ||||||| || |||||||| || || |||||||||| |
|
|
| T |
4642311 |
gcataaaaggcctacggttctcgcaatctatgagtgatgaagggagtggtatgcatttcgcaagatcccagacttttaaggagagca |
4642225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 4660505 - 4660403
Alignment:
| Q |
4 |
tcaatgaatcaagtggttgtgagtttggagtctgtgttgcagttggtggtgagtgacgaagatagtcagtttggtatgaccaaaaaagagagaacatgta |
103 |
Q |
| |
|
||||||| ||||||||||| | |||| |||| ||||||||| |||||||||||||| | ||||||||| ||||||| |||| ||||| |||| |||| || |
|
|
| T |
4660505 |
tcaatgagtcaagtggttgggggtttagagtttgtgttgcaattggtggtgagtgagggagatagtcaatttggtacgacccaaaaatagaggacatata |
4660406 |
T |
|
| Q |
104 |
tga |
106 |
Q |
| |
|
||| |
|
|
| T |
4660405 |
tga |
4660403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 4671347 - 4671170
Alignment:
| Q |
1 |
ccctcaatgaatcaagtggttgtgagtttggagtctgtgttgcagttggtggtgagtgacgaagatagtcagtttggtatgaccaaaaaagagagaacat |
100 |
Q |
| |
|
|||||||||| ||||||||||| | |||| |||| ||||||||| |||||||||||||| |||||||| || |||||| ||| |||||||| |
|
|
| T |
4671347 |
ccctcaatgagtcaagtggttgggggtttagagtttgtgttgcaattggtggtgagtgaggaagatagcgaggttggtacaacccaaaaagag------- |
4671255 |
T |
|
| Q |
101 |
gtatgaaaggtctttgcttctcgaaatttatgagtgataaagggagtgagctgcattttgcgagatcccacaccttgaaggagagca |
187 |
Q |
| |
|
||||||||||| | |||| | ||||||||||||| |||||||||| ||||||| || ||||||| ||||| |||||||||| |
|
|
| T |
4671254 |
--atgaaaggtctacgattcttgccatttatgagtgatgaagggagtgatatgcatttcgcaagatcccgcacctataaggagagca |
4671170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 4635564 - 4635382
Alignment:
| Q |
1 |
ccctcaatgaatcaagtggttgtgagtttggagtctgtgttgcagttggtggtgagtgacgaagatagtcagtttggtatgaccaaaaaagagagaacat |
100 |
Q |
| |
|
|||||||||| ||||||||||| | |||| |||| || |||||| || ||||||||||| |||||| | | |||||| |||| ||||||||| |||| |
|
|
| T |
4635564 |
ccctcaatgagtcaagtggttgggggtttagagtttgcgttgcaattagtggtgagtgaggaagattgcaacgttggtacgacccaaaaagagatgacat |
4635465 |
T |
|
| Q |
101 |
gtatgaaaggtctttgcttctcgaaatttatgagtgataaagggagtgagctgcattttgcgagatcccacaccttgaaggag |
183 |
Q |
| |
|
| || ||||| || | |||||| ||| |||||||||| ||||||||| ||||||| || |||||||| || || |||||| |
|
|
| T |
4635464 |
gcataaaaggcctacggttctcgcaatctatgagtgatgaagggagtggtatgcatttcgcaagatcccagacttttaaggag |
4635382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 4629616 - 4629511
Alignment:
| Q |
1 |
ccctcaatgaatcaagtggttgtgagtttggagtctgtgttgcagttggtggtgagtgacgaagatagtcagtttggtatgaccaaaaaagagagaacat |
100 |
Q |
| |
|
|||||||||| ||||||||||| | |||| |||| || ||||| ||||| |||||||| |||||||| || |||||||||||| ||||||| || |||| |
|
|
| T |
4629616 |
ccctcaatgagtcaagtggttgggggtttagagtttgcattgcaattggtagtgagtgaagaagatagccaatttggtatgacccaaaaagataggacat |
4629517 |
T |
|
| Q |
101 |
gtatga |
106 |
Q |
| |
|
||||| |
|
|
| T |
4629516 |
atatga |
4629511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 4665642 - 4665537
Alignment:
| Q |
1 |
ccctcaatgaatcaagtggttgtgagtttggagtctgtgttgcagttggtggtgagtgacgaagatagtcagtttggtatgaccaaaaaagagagaacat |
100 |
Q |
| |
|
|||||||||| ||||||||||| | |||| |||| || ||||| ||||| |||||||| |||||||| || |||||||||||| ||||||| || |||| |
|
|
| T |
4665642 |
ccctcaatgagtcaagtggttgggggtttagagtttgcattgcaattggtagtgagtgaagaagatagccaatttggtatgacccaaaaagataggacat |
4665543 |
T |
|
| Q |
101 |
gtatga |
106 |
Q |
| |
|
||||| |
|
|
| T |
4665542 |
atatga |
4665537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University