View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_high_67 (Length: 240)
Name: NF3545_high_67
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_high_67 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42060523 - 42060743
Alignment:
| Q |
1 |
cttatatctgctaattgagagcattgtaattaacatagtttctactttttaatttctatctgtgccaattgtatagatacggtagaaagttgaacaggat |
100 |
Q |
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| T |
42060523 |
cttatatctgctaattgagagcattgtaattaacatagtttctactttttaatttctatctgtgccaattgtatagatacggtagaaagttgaacaggat |
42060622 |
T |
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| Q |
101 |
gtacaaattgcaaaatagtttcaataaaccactgttagattctttgtatccaatgaaatttgcaaccatttgttctcctacagtaagcaatttgtttgaa |
200 |
Q |
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| T |
42060623 |
gtacaaattgcaaaatagtttgaataaaccactgttagattctttgtatccaatgaaatttgaaaccatttgttctcctacagtaagcaatttatttgaa |
42060722 |
T |
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| Q |
201 |
acgattcacaatagccacaag |
221 |
Q |
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| T |
42060723 |
acgattcacaatagccacaag |
42060743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 42084382 - 42084472
Alignment:
| Q |
5 |
tatctgctaattgagagcattgtaattaacatagtttctactttttaatttctatctgtgccaattgtatagatacggtagaaagttgaac |
95 |
Q |
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||||||||| |||| | ||||||||||||||||||||||||||| ||||||| |||| || |||||| ||| |||| |||||||||||||| |
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| T |
42084382 |
tatctgctatttgacaacattgtaattaacatagtttctactttgtaatttcaatctttgtcaattgcataaatacagtagaaagttgaac |
42084472 |
T |
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