View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_high_68 (Length: 240)
Name: NF3545_high_68
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_high_68 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 42060090 - 42059853
Alignment:
| Q |
1 |
ttgtaaacatagaaattgaagaagattccaactactccccatgaaatataattgattgatctagctggtggtataccactggcacctccaatgataagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42060090 |
ttgtaaacatagaaattgaagaagattccaactactccccatgaaatataattgattgatctagctggtggtataccactggcacctccaatgataagtg |
42059991 |
T |
|
| Q |
101 |
gcatgttgatgagttcaatccacttgtggttcgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaaccaattcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42059990 |
gcatgttgatgagttcaatccacttgtggttcgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaaccaattcat |
42059891 |
T |
|
| Q |
201 |
tccagggtaaattccatccttggtaaacatcctctgtg |
238 |
Q |
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| T |
42059890 |
tccagggtaaattccatccttggtaaacatcctttgtg |
42059853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 42083967 - 42083735
Alignment:
| Q |
1 |
ttgtaaacatagaaattgaagaagattccaactactccccatgaaatataattgattgatctagctggtggtataccactggcacctccaatgataagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| |
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| T |
42083967 |
ttgtaaacatagaaattgaagaagattccaacaactccccatgaaatataattgattgacctagctggtggtataccactagcacctccaattataagtg |
42083868 |
T |
|
| Q |
101 |
gcatgttgatgagttcaatccacttgtggttcgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaaccaattcat |
200 |
Q |
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| T |
42083867 |
gcatgttgatgagttcaatccacttgtggttcgggtatttgcgagctagaaaccacaccggaacaggcgcaagtagaccgatgaggaaaaaccaattcat |
42083768 |
T |
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| Q |
201 |
tccagggtaaattccatccttggtaaacatcct |
233 |
Q |
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| T |
42083767 |
tccagggtatattccatccttggtgaacatcct |
42083735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 42075387 - 42075155
Alignment:
| Q |
1 |
ttgtaaacatagaaattgaagaagattccaactactccccatgaaatataattgattgatctagctggtggtataccactggcacctccaatgataagtg |
100 |
Q |
| |
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||||||||||||| |||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| |||| ||| ||||||||| || |
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| T |
42075387 |
ttgtaaacatagatattgaagaagattccaacaactccccatgaaatgtaactgattgatctagctggtggtatacctttggcccctgcaatgataattg |
42075288 |
T |
|
| Q |
101 |
gcatgttgatgagttcaatccacttgtggttcgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaaccaattcat |
200 |
Q |
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||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42075287 |
gcatgttgacgagttcaatccactttcggtttgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaaccaattcaa |
42075188 |
T |
|
| Q |
201 |
tccagggtaaattccatccttggtaaacatcct |
233 |
Q |
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||||||||| |||||||||||||| |||||||| |
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| T |
42075187 |
tccagggtatattccatccttggtgaacatcct |
42075155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 235
Target Start/End: Original strand, 36523400 - 36523532
Alignment:
| Q |
103 |
atgttgatgagttcaatccacttgtggttcgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaaccaattcattc |
202 |
Q |
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||||| ||||||| ||||||||| ||||| | ||||| ||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||| |
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| T |
36523400 |
atgttaatgagttgaatccacttttggttacgaaatttgagagaaagaagccacactggaacaggtgcaagtagaccaataaggaaaaaccaattcatct |
36523499 |
T |
|
| Q |
203 |
cagggtaaattccatccttggtaaacatcctct |
235 |
Q |
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|||| |||| || || ||||||||||| |||| |
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| T |
36523500 |
caggataaacgccgtctttggtaaacattctct |
36523532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 235
Target Start/End: Original strand, 36535824 - 36535977
Alignment:
| Q |
82 |
gcacctccaatgataagtggcatgttgatgagttcaatccacttgtggttcgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccga |
181 |
Q |
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|||||| ||||||||| || |||||||| |||| ||||||||||||||| || ||||| || ||||||||||| || ||||| |||| ||| || | |
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| T |
36535824 |
gcacctacaatgataataggaatgttgataagtttaatccacttgtggttaggaaatttgatagaaagaagccacaccggtacaggtgcaattaggccaa |
36535923 |
T |
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| Q |
182 |
tgaggaaaaaccaattcattccagggtaaattccatccttggtaaacatcctct |
235 |
Q |
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| T |
36535924 |
taaggaaaaaccaattcatcccaggataaacgccgtcattggtaaacattctct |
36535977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 36530134 - 36530329
Alignment:
| Q |
4 |
taaacatagaaattgaagaagattccaactactccccatgaaatataattgattgatctagctggtggtataccactggcacctccaatgataagtggca |
103 |
Q |
| |
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||||||||||||||||| || |||||||| | ||||| | ||||||||| | ||||| | ||||| || || |||||| ||||||||| || | |
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| T |
36530134 |
taaacatagaaattgaaaaatattccaacaatcccccaagtaatataattcacagatctcacaggtgggatgtcagatgcacctgcaatgataataggaa |
36530233 |
T |
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| Q |
104 |
tgttgatgagttcaatccacttgtggttcgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaaccaattca |
199 |
Q |
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||||||||| || ||||||||| ||||| || ||||| ||| ||||||||||| ||||| || || | ||||||||| |||||||||||||||| |
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| T |
36530234 |
tgttgatgaattgaatccacttttggttgggaaatttgagagaaagaagccacacgggaactggtgcgattagaccgataaggaaaaaccaattca |
36530329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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