View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_high_70 (Length: 239)
Name: NF3545_high_70
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_high_70 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 42330846 - 42330719
Alignment:
| Q |
78 |
agtaacattttattttaagcaaaggaatgaggagcagaatggtttatagtaaaaggagagctccaccttcttgttttgttaccaatcttggaacttggtt |
177 |
Q |
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| T |
42330846 |
agtaacattttattttatgcaaaggaatgaggagcagaatggtttatagtaaaaggagagctccaccttcttgttttgttaccaatcttggaacttggtt |
42330747 |
T |
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| Q |
178 |
tgaatcttagttttattctgaaatgaca |
205 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
42330746 |
tgaatcttagttttattctgaaatgaca |
42330719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 42331673 - 42331596
Alignment:
| Q |
1 |
tgcacacacgcaactccctttctcaacaaaagaatacaaaaggaacataaaaacatactccttccataactcatagta |
78 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42331673 |
tgcacacacgcaactccctttctcaacaaaagaatacaaaaggaacataaaagcatactccttccataactcatagta |
42331596 |
T |
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