View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3545_high_72 (Length: 237)
Name: NF3545_high_72
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_high_72 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 15076921 - 15077143
Alignment:
| Q |
1 |
gagcataatttaggttacttgaaagaaagtatgactaggccagacaaagttttatttttgaaatatgaagaacttaaagaagatccaattttccatgtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15076921 |
gagcataatttaggttacttgaaagaaagtatgattaggccagacaaagttatatttttgaaatatgaagaacttaaagaagatccaatttttcatgtca |
15077020 |
T |
|
| Q |
101 |
ctagacttgcaacatttttgggctattctttcactcaagaagaggaatcgaaaaaagtggtagaaaacataatcaatttatgttgttttgaaacgatgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15077021 |
ctagacttgcaacatttttgggctattctttcactcaagaagaggaatcgaaaaaagtggtagaaaacataatcaatttatgttgttttgaaacgatgaa |
15077120 |
T |
|
| Q |
201 |
ggaattggaggtaaataaatttg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
15077121 |
ggaattggaggtaaataaatttg |
15077143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 15165222 - 15165003
Alignment:
| Q |
1 |
gagcataatttaggttacttgaaagaaagtatgactaggccagacaaagttttatttttgaaatatgaagaacttaaagaagatccaattttccatgtca |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15165222 |
gagcatactttaggttacttgaaagaaagtatgactagtccagacaaaattttatttttgaaatatgaagaacttaaagaagatccaatttttcatgtca |
15165123 |
T |
|
| Q |
101 |
ctagacttgcaacatttttgggctattctttcactcaagaagaggaatcgaaaaaagtggtagaaaacataatcaatttatgttgttttgaaacgatgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15165122 |
ctagacttgcaacatttttgggctattctttcactcaagaagaggaatctaaaaaagtggtagaaaacataatcaatttatgttgttttgaaacgatgaa |
15165023 |
T |
|
| Q |
201 |
ggaattggaggtaaataaat |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
15165022 |
ggaattggaggtaaataaat |
15165003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 15171589 - 15171523
Alignment:
| Q |
1 |
gagcataatttaggttacttgaaagaaagtatgactaggccagacaaagttttatttttgaaatatg |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15171589 |
gagcataatttaggttacttgaaagaaagtatgactaggtcagacaaagttttatttttgaaatatg |
15171523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 4506477 - 4506262
Alignment:
| Q |
4 |
cataatttaggttacttgaaagaaagtatgactaggccagacaaagttttatttttgaaatatgaagaacttaaagaagatccaattttccatgtcacta |
103 |
Q |
| |
|
||||| || ||||||||||| ||||| ||| |||| || |||||||| |||| |||||||||||||| ||||||| || ||||||| || |||| || |
|
|
| T |
4506477 |
cataagttgggttacttgaaggaaagcatggctagatcacacaaagttctattcttgaaatatgaagatgttaaagagaatgcaatttttcaagtcaata |
4506378 |
T |
|
| Q |
104 |
gacttgcaacatttttgggctattctttcactcaagaagaggaatcgaaaaaagtggtagaaaacataatcaatttatgttgttttgaaacgatgaagga |
203 |
Q |
| |
|
|| |||||| ||||||||||| |||| ||| ||||||||| | || ||| | ||||||||||||| |||||||| | ||||||| ||||||||| |
|
|
| T |
4506377 |
gaattgcaaattttttgggctacccttttactagagaagaggaga-gtaataagagatagaaaacataatagatttatgtggctttgaaaagatgaagga |
4506279 |
T |
|
| Q |
204 |
attggaggtaaataaat |
220 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4506278 |
attggaggtaaataaat |
4506262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 223
Target Start/End: Original strand, 15751431 - 15751619
Alignment:
| Q |
35 |
ctaggccagacaaagttttatttttgaaatatgaagaacttaaagaagatccaattttccatgtcactagacttgcaacatttttgggctattctttcac |
134 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||| ||||||||| || || || ||||||| ||| ||||| || |||| | | ||||||| |
|
|
| T |
15751431 |
ctagaccagacaaggttttattcatgaaatatgaagatcttaaagaaaatggaaattctcatgtcaaaagaattgcagagttcttggattgtcctttcac |
15751530 |
T |
|
| Q |
135 |
tcaagaagaggaatcgaaaaaagtggtagaaaacataatcaatttatgttgttttgaaacgatgaaggaattggaggtaaataaatttg |
223 |
Q |
| |
|
||||||||||||| || ||| | || || || |||||||||||| | ||| ||| ||||||||||||||||| ||||||||||| |
|
|
| T |
15751531 |
tcaagaagaggaaagtaatggtgtgattgagaatattatcaatttatgtagctttaaaaagatgaaggaattggaggcaaataaatttg |
15751619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University