View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3545_high_77 (Length: 236)

Name: NF3545_high_77
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3545_high_77
NF3545_high_77
[»] chr3 (19 HSPs)
chr3 (1-210)||(28001869-28002075)
chr3 (1-62)||(28147378-28147439)
chr3 (115-228)||(17746735-17746848)
chr3 (115-228)||(19048055-19048168)
chr3 (1-58)||(28053315-28053372)
chr3 (1-58)||(28063740-28063797)
chr3 (1-62)||(28081558-28081619)
chr3 (1-62)||(28183579-28183640)
chr3 (3-62)||(28131762-28131821)
chr3 (1-62)||(27918187-27918248)
chr3 (1-62)||(28482217-28482278)
chr3 (1-62)||(17746551-17746612)
chr3 (1-62)||(19047871-19047932)
chr3 (1-62)||(28511029-28511090)
chr3 (180-236)||(28053089-28053145)
chr3 (180-236)||(28063514-28063570)
chr3 (112-183)||(28183391-28183462)
chr3 (2-62)||(27974362-27974422)
chr3 (112-164)||(28147205-28147257)
[»] chr7 (1 HSPs)
chr7 (1-62)||(8693717-8693778)
[»] scaffold0257 (2 HSPs)
scaffold0257 (8-62)||(17164-17218)
scaffold0257 (115-187)||(16969-17041)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 28002075 - 28001869
Alignment:
Q  1 ataggcagaacatccaaatcaataacttccaaagctaagttcatttgttgttcatttatttccttaagactttctaaagcgcgaaaatgttccacattcc 100  Q
    ||||||||||||  ||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28002075 ataggcagaacaagcaattcaataattttcaaagctaagttcatttgttgttcatttatttccttaagactttctaaagcgcgaaaatgttccacattcc 28001976  T
Q  101 cacccgattcctgcataaaataaaaataacaaagtcatgtaaatacaacaaagttgataaaaggttgtggagatatttaatatactagaatgtcgattca 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||   |||||||||||||||||||||||||||||| ||||||||||    
T  28001975 cacccgattcctgcataaaataagaataacaaagtcatgtaaatacaacagagttg---aaaggttgtggagatatttaatatactagagtgtcgattca 28001879  T
Q  201 aactcactat 210  Q
    ||||||||||    
T  28001878 aactcactat 28001869  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 28147439 - 28147378
Alignment:
Q  1 ataggcagaacatccaaatcaataacttccaaagctaagttcatttgttgttcatttatttc 62  Q
    |||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  28147439 ataggcagaacatccaaatcaatgtcttccaaagctaagttcatttgctgttcatttatttc 28147378  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 115 - 228
Target Start/End: Original strand, 17746735 - 17746848
Alignment:
Q  115 ataaaataaaaataacaaagtcatgtaaatacaacaaagttg-ataaaaggttgtggagatatttaatatactagaatgtcgattcaaactcactatttc 213  Q
    ||||||||| |||||||||||| ||||| ||||| | || |  ||||||||||||| |||||||| |||||| ||| ||| |||||||||||||  ||||    
T  17746735 ataaaataagaataacaaagtc-tgtaagtacaatagagatatataaaaggttgtgaagatatttgatatacgagagtgttgattcaaactcacagtttc 17746833  T
Q  214 tctctacttagacac 228  Q
    |||||||||||||||    
T  17746834 tctctacttagacac 17746848  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 115 - 228
Target Start/End: Original strand, 19048055 - 19048168
Alignment:
Q  115 ataaaataaaaataacaaagtcatgtaaatacaacaaagttg-ataaaaggttgtggagatatttaatatactagaatgtcgattcaaactcactatttc 213  Q
    ||||||||| |||||||||||| ||||| ||||| | || |  ||||||||||||| |||||||| |||||| ||| ||| |||||||||||||  ||||    
T  19048055 ataaaataagaataacaaagtc-tgtaagtacaatagagatatataaaaggttgtgaagatatttgatatacgagagtgttgattcaaactcacagtttc 19048153  T
Q  214 tctctacttagacac 228  Q
    |||||||||||||||    
T  19048154 tctctacttagacac 19048168  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 28053372 - 28053315
Alignment:
Q  1 ataggcagaacatccaaatcaataacttccaaagctaagttcatttgttgttcattta 58  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||    
T  28053372 ataggcagaacatccaaatcaatgactttcaaagctaagttcatttgatgttcattta 28053315  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 28063797 - 28063740
Alignment:
Q  1 ataggcagaacatccaaatcaataacttccaaagctaagttcatttgttgttcattta 58  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||    
T  28063797 ataggcagaacatccaaatcaatgactttcaaagctaagttcatttgatgttcattta 28063740  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 28081619 - 28081558
Alignment:
Q  1 ataggcagaacatccaaatcaataacttccaaagctaagttcatttgttgttcatttatttc 62  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||  ||||||||||||||    
T  28081619 ataggcagaacatccaaatcaatgactttcaaagctaagttcattttctgttcatttatttc 28081558  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 28183640 - 28183579
Alignment:
Q  1 ataggcagaacatccaaatcaataacttccaaagctaagttcatttgttgttcatttatttc 62  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||    
T  28183640 ataggcagaacatccaaatcaatgtcttccaaagctaagttcatttgccgttcatttatttc 28183579  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 28131821 - 28131762
Alignment:
Q  3 aggcagaacatccaaatcaataacttccaaagctaagttcatttgttgttcatttatttc 62  Q
    ||||| |||||||||||||||  ||| |||||||||||||||||| ||||||||||||||    
T  28131821 aggcaaaacatccaaatcaatgtctttcaaagctaagttcatttgctgttcatttatttc 28131762  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 27918248 - 27918187
Alignment:
Q  1 ataggcagaacatccaaatcaataacttccaaagctaagttcatttgttgttcatttatttc 62  Q
    ||||||||||||| ||||| ||| | ||||||| |||| |||||||||||||||||||||||    
T  27918248 ataggcagaacattcaaataaatgaattccaaacctaatttcatttgttgttcatttatttc 27918187  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 28482217 - 28482278
Alignment:
Q  1 ataggcagaacatccaaatcaataacttccaaagctaagttcatttgttgttcatttatttc 62  Q
    ||||||||||||| |||||||||  ||| |||||||||| ||| ||||||||||||||||||    
T  28482217 ataggcagaacattcaaatcaatttctttcaaagctaagctcagttgttgttcatttatttc 28482278  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 17746551 - 17746612
Alignment:
Q  1 ataggcagaacatccaaatcaataacttccaaagctaagttcatttgttgttcatttatttc 62  Q
    |||||||||||| |||||  |||  |||||||||||||||||||||| ||||||||| ||||    
T  17746551 ataggcagaacacccaaaataatttcttccaaagctaagttcatttgctgttcatttctttc 17746612  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 19047871 - 19047932
Alignment:
Q  1 ataggcagaacatccaaatcaataacttccaaagctaagttcatttgttgttcatttatttc 62  Q
    |||||||||||| |||||  |||  |||||||||||||||||||||| ||||||||| ||||    
T  19047871 ataggcagaacacccaaaataatttcttccaaagctaagttcatttgctgttcatttctttc 19047932  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 28511029 - 28511090
Alignment:
Q  1 ataggcagaacatccaaatcaataacttccaaagctaagttcatttgttgttcatttatttc 62  Q
    ||||||| ||||| |||||||||  ||| |||||||||| ||| ||||||||||||||||||    
T  28511029 ataggcaaaacattcaaatcaatgtctttcaaagctaagctcagttgttgttcatttatttc 28511090  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 28053145 - 28053089
Alignment:
Q  180 atatactagaatgtcgattcaaactcactatttctctctacttagacacgccatgtc 236  Q
    |||||||||| ||| ||||||||||||| |||||||   ||||||||||||||||||    
T  28053145 atatactagagtgttgattcaaactcacaatttctccagacttagacacgccatgtc 28053089  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 28063570 - 28063514
Alignment:
Q  180 atatactagaatgtcgattcaaactcactatttctctctacttagacacgccatgtc 236  Q
    |||||||||| ||| ||||||||||||| |||||||   ||||||||||||||||||    
T  28063570 atatactagagtgttgattcaaactcacaatttctccagacttagacacgccatgtc 28063514  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 28183462 - 28183391
Alignment:
Q  112 tgcataaaataaaaataacaaagtcatgtaaatacaacaaagttgataaaaggttgtggagatatttaatat 183  Q
    |||||||||||| |||||||||||  ||||| ||||| | || |||||| ||| ||||||||||||| ||||    
T  28183462 tgcataaaataagaataacaaagttctgtaagtacaatagagatgataataggctgtggagatatttgatat 28183391  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 27974422 - 27974362
Alignment:
Q  2 taggcagaacatccaaatcaataacttccaaagctaagttcatttgttgttcatttatttc 62  Q
    |||| |||||||||||||||||   ||||||| || || ||||||| ||||||||||||||    
T  27974422 taggaagaacatccaaatcaattctttccaaacctgagatcatttgatgttcatttatttc 27974362  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 28147257 - 28147205
Alignment:
Q  112 tgcataaaataaaaataacaaagtcatgtaaatacaacaaagttgataaaagg 164  Q
    |||||||||||| |||||||||||||| ||| ||||| | || ||||||||||    
T  28147257 tgcataaaataagaataacaaagtcatataagtacaatagagatgataaaagg 28147205  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 8693717 - 8693778
Alignment:
Q  1 ataggcagaacatccaaatcaataacttccaaagctaagttcatttgttgttcatttatttc 62  Q
    ||||| |||||||||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  8693717 ataggaagaacatccaaatcaataaactccaaagctaagttcatttgctgttcatttatttc 8693778  T

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Target: scaffold0257 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 17218 - 17164
Alignment:
Q  8 gaacatccaaatcaataacttccaaagctaagttcatttgttgttcatttatttc 62  Q
    ||||||||||||||||   || |||||||||||||||||| ||||||||||||||    
T  17218 gaacatccaaatcaatgtatttcaaagctaagttcatttgctgttcatttatttc 17164  T

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Target: scaffold0257; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 17041 - 16969
Alignment:
Q  115 ataaaataaaaataacaaagtcatgtaaatacaacaaagttgataaaaggttgtggagatatttaatatacta 187  Q
    ||||||||| |||||||||||  ||||| ||||| | || |||||||| | | ||||||||||| ||||||||    
T  17041 ataaaataagaataacaaagtgctgtaattacaatagagatgataaaaagctatggagatattttatatacta 16969  T

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