View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_high_80 (Length: 224)
Name: NF3545_high_80
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_high_80 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 51803403 - 51803626
Alignment:
| Q |
1 |
actgtacacatcacactttgttgttgctcttggtgaatatgcatattctgtcacaccatccatcaaaacaaattaattagatttaaacaagcttacgata |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
51803403 |
actgtacacatcacactttgtggttgctcttggtgaatatgcatattctgtcacaccatccatcaaaacaaattaaatagatttaaacaagcttacaata |
51803502 |
T |
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| Q |
101 |
tgataataagattacttaccgcttaagttaaccacatgactaataccctaatacaaaatactgtttaatcaaatcctacctctgtccctaaatatataat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51803503 |
tgataataagattacttaccgcttaagttaaccacatcactaataccctaatacaaaatactgtttaatcaaatcctacctctgtccctaaatatataat |
51803602 |
T |
|
| Q |
201 |
ccttttgaagttttaactgtgtta |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
51803603 |
ccttttgaagttttaactgtgtta |
51803626 |
T |
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