View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3545_high_82 (Length: 219)
Name: NF3545_high_82
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_high_82 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 37841859 - 37842046
Alignment:
| Q |
17 |
ggaatcaatcaactacaaggcgacataccttctgatgtaggaagatgtgcaactctgacgaggttgttgctgaatcaaaataatttcactgggtctcttc |
116 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||| | |||||||| |||||||| | ||||||||| || ||||||||||||||||| ||||| |||| |
|
|
| T |
37841859 |
ggaatcaatcaactacaaggtggcataccttctgatcttggaagatgcgcaactctaaggaggttgtttctcaatcaaaataatttcaccgggtcgcttc |
37841958 |
T |
|
| Q |
117 |
ctgattttgaaagtgatctgaacctgaaatacatggacataagcaagaacaatatcagcgggccaattccatcgagtttgggaaattg |
204 |
Q |
| |
|
||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37841959 |
ctgattttgcaagtaatcttaacctgaaatacatggacataagcaagaacaatatcagcgggccaattccatcgagtttgggaaattg |
37842046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 37849615 - 37849802
Alignment:
| Q |
17 |
ggaatcaatcaactacaaggcgacataccttctgatgtaggaagatgtgcaactctgacgaggttgttgctgaatcaaaataatttcactgggtctcttc |
116 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||||||||||||||||| |||||||| ||||||||| || ||| ||||||||||||| |||||||||| |
|
|
| T |
37849615 |
ggaatcaatcaacttcaaggcaatataccttctgatgtaggaagatgtgaaactctgatgaggttgtttctcaatgaaaataatttcaccgggtctcttc |
37849714 |
T |
|
| Q |
117 |
ctgattttgaaagtgatctgaacctgaaatacatggacataagcaagaacaatatcagcgggccaattccatcgagtttgggaaattg |
204 |
Q |
| |
|
| |||||||||||| || |||||||||||||||||||||| || |||||||| ||||| || | |||||||| |||||||||||||| |
|
|
| T |
37849715 |
ccgattttgaaagtaatttgaacctgaaatacatggacatgagtaagaacaaaatcagtggacggattccatcaagtttgggaaattg |
37849802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 37830536 - 37830723
Alignment:
| Q |
17 |
ggaatcaatcaactacaaggcgacataccttctgatgtaggaagatgtgcaactctgacgaggttgttgctgaatcaaaataatttcactgggtctcttc |
116 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||| ||||||||||||||||||| | ||||||||| || ||||||||||||||||| |||| |||| |
|
|
| T |
37830536 |
ggaatcaatcaactacaaggtggcataccttctgatctaggaagatgtgcaactctaaggaggttgtttctcaatcaaaataatttcaccgggttgcttc |
37830635 |
T |
|
| Q |
117 |
ctgattttgaaagtgatctgaacctgaaatacatggacataagcaagaacaatatcagcgggccaattccatcgagtttgggaaattg |
204 |
Q |
| |
|
| ||||||| |||| |||| |||||||||||||||||||||||||| |||||||| | || |||||| |||| |||||||||||||| |
|
|
| T |
37830636 |
ccgattttgcaagtaatcttaacctgaaatacatggacataagcaaaaacaatattggtggaccaattacatcaagtttgggaaattg |
37830723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 37836240 - 37836427
Alignment:
| Q |
17 |
ggaatcaatcaactacaaggcgacataccttctgatgtaggaagatgtgcaactctgacgaggttgttgctgaatcaaaataatttcactgggtctcttc |
116 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||||| |||||||||||| |||||||| ||||||| | | ||| ||||||||||||| |||||||||| |
|
|
| T |
37836240 |
ggaatcaatcaacttcaaggtggcataccttctgatctaggaagatgtgaaactctgatgaggttgattatcaatgaaaataatttcaccgggtctcttc |
37836339 |
T |
|
| Q |
117 |
ctgattttgaaagtgatctgaacctgaaatacatggacataagcaagaacaatatcagcgggccaattccatcgagtttgggaaattg |
204 |
Q |
| |
|
|||||||||| ||| || |||||||||| ||||||||| | ||||||||||||||||| || ||| ||||||| |||||||||||||| |
|
|
| T |
37836340 |
ctgattttgagagtaatttgaacctgaactacatggacttgagcaagaacaatatcagtggaccagttccatcaagtttgggaaattg |
37836427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 36864996 - 36865177
Alignment:
| Q |
17 |
ggaatcaatcaactacaaggcgacataccttctgatgtaggaagatgtgcaactctgacgaggttgttgctgaatcaaaataatttcactgggtctcttc |
116 |
Q |
| |
|
||||| |||||||| ||||| | ||| ||||||||| |||||||||||| |||||||| ||||| | ||| ||||||||||||| |||||||||| |
|
|
| T |
36864996 |
ggaattaatcaacttcaaggtggcattccttctgatataggaagatgtgaaactctga-----ttgtttttcaatgaaaataatttcaccgggtctcttc |
36865090 |
T |
|
| Q |
117 |
ctgattttgaaagtgatctgaacctgaaatacatggacataagcaagaacaatatcagcgggccaattccatcgagtttgggaaatt |
203 |
Q |
| |
|
| |||||||||||| || |||||||||||||||||||||| |||||||||| |||| | || || || ||||| ||||||||||||| |
|
|
| T |
36865091 |
ccgattttgaaagtaatatgaacctgaaatacatggacatgagcaagaacagtatcggtggaccgataccatcaagtttgggaaatt |
36865177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University