View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3545_low_10 (Length: 584)

Name: NF3545_low_10
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3545_low_10
NF3545_low_10
[»] chr1 (2 HSPs)
chr1 (47-568)||(40383629-40384155)
chr1 (47-181)||(12673143-12673270)
[»] chr8 (1 HSPs)
chr8 (47-181)||(40536240-40536367)
[»] chr7 (1 HSPs)
chr7 (47-181)||(45752601-45752728)
[»] chr5 (1 HSPs)
chr5 (70-181)||(16081644-16081748)
[»] chr2 (1 HSPs)
chr2 (47-122)||(981526-981601)
[»] chr3 (2 HSPs)
chr3 (48-173)||(46911761-46911879)
chr3 (48-105)||(32993495-32993552)
[»] chr4 (2 HSPs)
chr4 (127-181)||(15828367-15828421)
chr4 (53-102)||(15828300-15828349)


Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 47 - 568
Target Start/End: Original strand, 40383629 - 40384155
Alignment:
Q  47 ctaagaagctaatcgcatactcttaggcatgcacgttccagaaatatcatcaaacatgaagctttggagctcattaagatttaggaagagactccaaaac 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383629 ctaagaagctaatcgcatactcttaggcatgcacgttccagaaatatcatcaaacatgaagctttggagctcattaagatttaggaagagactccaaaac 40383728  T
Q  147 tatcaaattccaagaattcaaagataaactaaaatgttatattatgaaacccacacacaccaaaaatagagaaaaaaggtattgggagttaaaacttgca 246  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  40383729 tatcagattccaagaattcaaaaataaactaaaatgttctattatgaaacccacacacaccaaaaatagagaaaaaaggtattgcgagttaaaacttaca 40383828  T
Q  247 ttcg----tatcaaatattaatatagnnnnnnn-agcatcagagtaatactttatgagattaaattttactacttttctgttatatatccctacaatgac 341  Q
    |||     |||||||| ||||| |||        | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40383829 ttccaacatatcaaatgttaatgtagttttttttaccatcagagtaatactttatgagattaaattttactactattctgttatatatccctacaatgac 40383928  T
Q  342 attggaatgattttcattttcacagtcaatgcacatgatggaattttttctgtatgatggagaacgacaagagagagcaataaaagaaactttggaaact 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383929 attggaatgattttcattttcacagtcaatgcacatgatggaattttttctgtatgatggagaacgacaagagagagcaataaaagaaactttggaaact 40384028  T
Q  442 ttgagagtgattgaaaaggaaagtggacttagtgaaaagatgttcattggtggcaacacaattggattggcagacatagccttgggttgggtggcacata 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40384029 ttgagagtgattgaaaaggaaagtggacttagtgaaaagatgttcattggtggcaacacaattggattggcagacatagccttgggttgggtggcacata 40384128  T
Q  542 ctctgccagtcatggaagaaattgttg 568  Q
    |||||||||||||||||||||||||||    
T  40384129 ctctgccagtcatggaagaaattgttg 40384155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 47 - 181
Target Start/End: Original strand, 12673143 - 12673270
Alignment:
Q  47 ctaagaagctaatcgcatactcttaggcatgcacgttccagaaatatcatcaaacatgaagctttggagctcattaagatttaggaagagactccaaaac 146  Q
    ||||| ||||||||||||| |  || ||||||||| || | ||| |||||||||||||| |||||| |||||||||       ||| || ||||||||||    
T  12673143 ctaaggagctaatcgcatatttctaagcatgcacgctcgaaaaagatcatcaaacatgaggctttgaagctcatta-------ggaggatactccaaaac 12673235  T
Q  147 tatcaaattccaagaattcaaagataaactaaaat 181  Q
    ||||| ||||||||||||||||||||| |||||||    
T  12673236 tatcagattccaagaattcaaagataagctaaaat 12673270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 47 - 181
Target Start/End: Original strand, 40536240 - 40536367
Alignment:
Q  47 ctaagaagctaatcgcatactcttaggcatgcacgttccagaaatatcatcaaacatgaagctttggagctcattaagatttaggaagagactccaaaac 146  Q
    ||||| ||||||||||||| | ||||||||||||| |||| |||||||||||||||||| |||||| ||||||       |||||| ||||||||||| |    
T  40536240 ctaaggagctaatcgcatatttttaggcatgcacgctccaaaaatatcatcaaacatgaggctttgaagctca-------ttaggaggagactccaaagc 40536332  T
Q  147 tatcaaattccaagaattcaaagataaactaaaat 181  Q
    || || ||||||||||||||||||||| |||||||    
T  40536333 taccagattccaagaattcaaagataagctaaaat 40536367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 47 - 181
Target Start/End: Original strand, 45752601 - 45752728
Alignment:
Q  47 ctaagaagctaatcgcatactcttaggcatgcacgttccagaaatatcatcaaacatgaagctttggagctcattaagatttaggaagagactccaaaac 146  Q
    ||||| ||||||||||||| |  ||||||||||| ||||| |||||||||||||||||| |||||| ||||||       |||||| ||||||||||| |    
T  45752601 ctaaggagctaatcgcatatttctaggcatgcacattccaaaaatatcatcaaacatgaggctttgaagctca-------ttaggaggagactccaaagc 45752693  T
Q  147 tatcaaattccaagaattcaaagataaactaaaat 181  Q
    || || ||||||||||||||||||||| |||||||    
T  45752694 taccagattccaagaattcaaagataagctaaaat 45752728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 70 - 181
Target Start/End: Complemental strand, 16081748 - 16081644
Alignment:
Q  70 taggcatgcacgttccagaaatatcatcaaacatgaagctttggagctcattaagatttaggaagagactccaaaactatcaaattccaagaattcaaag 169  Q
    |||| ||||||| ||||||||||||||||||||||| |||||| |||||||||       ||| ||||||||||||||| ||||||||| ||||||||||    
T  16081748 taggtatgcacgctccagaaatatcatcaaacatgaggctttgaagctcatta-------ggaggagactccaaaactaccaaattccatgaattcaaag 16081656  T
Q  170 ataaactaaaat 181  Q
    |||| |||||||    
T  16081655 ataagctaaaat 16081644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 981601 - 981526
Alignment:
Q  47 ctaagaagctaatcgcatactcttaggcatgcacgttccagaaatatcatcaaacatgaagctttggagctcatta 122  Q
    ||||||||||||||||||| || |||||||||||| |||| |||||||||||||||||||| |||| |||||||||    
T  981601 ctaagaagctaatcgcatattcctaggcatgcacgctccataaatatcatcaaacatgaagttttgaagctcatta 981526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 48 - 173
Target Start/End: Complemental strand, 46911879 - 46911761
Alignment:
Q  48 taagaagctaatcgcatactcttaggcatgcacgttccagaaatatcatcaaacatgaagctttggagctcattaagatttaggaagagactccaaaact 147  Q
    |||| ||||||||||||| |  |||| ||||||| ||||||||||||||||||||||| |||||| ||||||       |||| | ||||||||||| ||    
T  46911879 taaggagctaatcgcatatttctaggtatgcacgctccagaaatatcatcaaacatgaggctttgaagctca-------ttagaaggagactccaaagct 46911787  T
Q  148 atcaaattccaagaattcaaagataa 173  Q
    |||| ||||||| |||||||||||||    
T  46911786 atcagattccaaaaattcaaagataa 46911761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 32993552 - 32993495
Alignment:
Q  48 taagaagctaatcgcatactcttaggcatgcacgttccagaaatatcatcaaacatga 105  Q
    |||| ||||||| ||||| |  |||| ||||||| |||||||||||||||||||||||    
T  32993552 taaggagctaattgcatatttctaggtatgcacgctccagaaatatcatcaaacatga 32993495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 15828367 - 15828421
Alignment:
Q  127 ttaggaagagactccaaaactatcaaattccaagaattcaaagataaactaaaat 181  Q
    |||||| |||||||||||||||  | ||||||||||||||||||||| |||||||    
T  15828367 ttaggaggagactccaaaactactagattccaagaattcaaagataagctaaaat 15828421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 15828300 - 15828349
Alignment:
Q  53 agctaatcgcatactcttaggcatgcacgttccagaaatatcatcaaaca 102  Q
    ||||| || |||| || |||||||||||| ||||||||||||||||||||    
T  15828300 agctactcacatattcctaggcatgcacgctccagaaatatcatcaaaca 15828349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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