View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_low_12 (Length: 564)
Name: NF3545_low_12
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 23 - 548
Target Start/End: Complemental strand, 34143458 - 34142934
Alignment:
| Q |
23 |
cacagatgataccggtttgcctggttatcatgatacagagcacaccaagaatgtaagagactggaaagaagtgtttgattttctctctaatgaccctact |
122 |
Q |
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| T |
34143458 |
cacagatgataccggtttgcctggttatcatgatacagagcacaccaagaatgtaagagactggaaagaagtgtttgattttctctctaatgaccctact |
34143359 |
T |
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| Q |
123 |
ttggttcctctgaattctgatgaacacgatgatcaagtcactcactggactaatccatcccctcaataccctccacacttcaagtaattcatctttgtac |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34143358 |
ttggttcctctgaattctgatgaacacgatgatcaagtcacttactggactaatccatcccctcaataccctccacacttcaagtaattcatctttgtac |
34143259 |
T |
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| Q |
223 |
catactaatcatgttaaatatgtttgtattccatgcaaaattatgcagttttgagtttagtagctt-aaaaaatgtatccatttttagttaactcgccat |
321 |
Q |
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| T |
34143258 |
catactaatcatgttaaatatgtttgtattccatgcaaaattatgcag--ttgagtttagtagcttaaaaaaatgtatccatttttagtcaactcaccat |
34143161 |
T |
|
| Q |
322 |
ttttagtcctttcaaaaggacaaaaacatattattctttgatatcaaactctaaataatttcagttattatactagcacacagttaatgatattgtagct |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34143160 |
ttttagtcctttcaaaaggacaaaaacatattattctttgatatcaaactctaaataatttcagttattatactagcacacagttaatgatattgtagct |
34143061 |
T |
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| Q |
422 |
cgcacctgcaccaacacttcagattgaaggttgtctgttgtccaacacgaacaaaaatctacacatgtagtaacgttcaattacaaccagttttttaaat |
521 |
Q |
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| T |
34143060 |
cgcacctgcaccaacacttcagattgaaggttgtctgttgtccaacacgaacaaaaatctacacatgtagtagcgttcaatcacaaccagttttttaaat |
34142961 |
T |
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| Q |
522 |
agctattggtgtctgcatgtcagtatt |
548 |
Q |
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| T |
34142960 |
agctattggtgtctgcgtgtcagtatt |
34142934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 43 - 204
Target Start/End: Complemental strand, 34137292 - 34137131
Alignment:
| Q |
43 |
ctggttatcatgatacagagcacaccaagaatgtaagagactggaaagaagtgtttgattttctctctaatgaccctactttggttcctctgaattctga |
142 |
Q |
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|||||||| |||||||||| |||||||| ||||| || ||||||||||||||| ||||||||||| | || || || ||||||||||||||||||||||| |
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| T |
34137292 |
ctggttattatgatacagaacacaccaaaaatgttagggactggaaagaagtgcttgattttctcgccaacgatcccactttggttcctctgaattctga |
34137193 |
T |
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| Q |
143 |
tgaacacgatgatcaagtcactcactggactaatccatcccctcaataccctccacacttca |
204 |
Q |
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| T |
34137192 |
tgaaaacgatgatcaatttattcaatggtctaatccatccccacaattcccttcacacttca |
34137131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 43 - 204
Target Start/End: Complemental strand, 34133381 - 34133220
Alignment:
| Q |
43 |
ctggttatcatgatacagagcacaccaagaatgtaagagactggaaagaagtgtttgattttctctctaatgaccctactttggttcctctgaattctga |
142 |
Q |
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|||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||| | || ||||| || ||||||| || |||||| |
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| T |
34133381 |
ctggttattatgatacagagcataccaaaaatgttagagactggaaagaagtgtttgattttctttctcaagatcctacattagttcctcggagttctga |
34133282 |
T |
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| Q |
143 |
tgaacacgatgatcaagtcactcactggactaatccatcccctcaataccctccacacttca |
204 |
Q |
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|||||| |||||| || | ||| |||||||||| ||| |||||||| |||||||| |||| |
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| T |
34133281 |
tgaacatgatgatggtgttattcaatggactaatcaatcacctcaatatcctccacaattca |
34133220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 44 - 185
Target Start/End: Complemental strand, 34127107 - 34126966
Alignment:
| Q |
44 |
tggttatcatgatacagagcacaccaagaatgtaagagactggaaagaagtgtttgattttctctctaatgaccctactttggttcctctgaattctgat |
143 |
Q |
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||||||| ||||| |||||||||||||||||||||| |||||| |||||||||||||||| || | | || || ||||||||||||||||||| |||| |
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| T |
34127107 |
tggttattttgataaagagcacaccaagaatgtaagaaactggatagaagtgtttgattttttcgccagagatcccactttggttcctctgaattgtgat |
34127008 |
T |
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| Q |
144 |
gaacacgatgatcaagtcactcactggactaatccatcccct |
185 |
Q |
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||| | ||||||||||| | ||| ||| ||||||| |||||| |
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| T |
34127007 |
gaaaatgatgatcaagttattcaatggtctaatccgtcccct |
34126966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 34140955 - 34140894
Alignment:
| Q |
43 |
ctggttatcatgatacagagcacaccaagaatgtaagagactggaaagaagtgtttgatttt |
104 |
Q |
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|||||||| |||| || || | |||||||||||| |||||| ||||||||||||||||||| |
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| T |
34140955 |
ctggttattatgacactgaactcaccaagaatgttagagacatgaaagaagtgtttgatttt |
34140894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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