View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_low_13 (Length: 522)
Name: NF3545_low_13
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 19 - 512
Target Start/End: Complemental strand, 25471643 - 25471150
Alignment:
| Q |
19 |
caatgtactagtagtataattaattctagcagtttagtttgttaaacagttagttggtttgataaatgaaacaagtttgcaataatgttggagtacagct |
118 |
Q |
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| T |
25471643 |
caatgtactagtagtataattaattctagcagtttagtttgttaaacagttagttggtttgataaatgaaacaagtttgcaataatgttggagtacaggt |
25471544 |
T |
|
| Q |
119 |
tctatatatatagtgagtgtatctcattgtaacaactagattggggattaaaattttcannnnnnnccatgcttcttctttaatttgttctctatgctta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25471543 |
tctatatatatagtgagtgtatctcattgtaacaactagattggggattaaaattttcatttttttccatgcttcttctttaatttgttctctatgctta |
25471444 |
T |
|
| Q |
219 |
tttgcaaccttttctatacatccatggagtccgagatcaacttttcacaatatagttgttactttatgcatttagcggtatccatgcttcttcttgtgta |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25471443 |
tttgcaaccttttctatacatccatggagtccgagatcaacttttcacaatatagttgttactttatgcatttagcggtattcatgcttcttcttgtgta |
25471344 |
T |
|
| Q |
319 |
atgaggtcatggtttcaaattagcggtctgcatccgcaattgcggccgcaacattgcagttatgatagcctgcacaaccgcatcgtaccacaattgcggg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
25471343 |
atgaggtcatggtttcaaattagcggtctgcatccgcaattgcggccgcaacattgcagttgtgatagcctgcacaaccgcatcgtaccacaattgtggg |
25471244 |
T |
|
| Q |
419 |
gttatctttaatcacgtgtgcggatactacgtaactgtgtccgacgacgatttcggcaatgttcgttctaaattcggataatatcttgcctttg |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25471243 |
gttatctttaatcacgtgtgcggatactacgtaactgtgtccgacgacgatttcggcaatgttcgttctaaattcggataatatcttgcctttg |
25471150 |
T |
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