View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_low_14 (Length: 510)
Name: NF3545_low_14
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Original strand, 53578521 - 53578989
Alignment:
| Q |
18 |
atcacaaatcaagacaagataacgcaacaaagtgggcaagacctcatggtgtcaagggattttcaggtccaatccaatccataattccacgtgaagctag |
117 |
Q |
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| T |
53578521 |
atcacaaatcaagacaagataacgcaacaaagtgggcaagacctcacggtgtcaagggattttcaggtccaatccaatccataattccacgtgaagctag |
53578620 |
T |
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| Q |
118 |
aagaaagtccaaagatattaatggaattgattatgaagaacccacttcaccaaaaatatcgtgcatgggacaaatcaagcacaagaagaaacaaatnnnn |
217 |
Q |
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| T |
53578621 |
aagaaagtccaaagatattaatggaattgattatgaagaacccacttcaccaaaaatatcgtgcatgggacaaatcaagcacaagaagaaacaaataaaa |
53578720 |
T |
|
| Q |
218 |
nnnttgaaagacatggaagtgaagaaacatgtaaacacttttcaaaagatgttgtttcatgttgggaaaccaaaatctgaaggaagaaggaaatcagatg |
317 |
Q |
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| T |
53578721 |
aaatcgaaagacatggaagtgaagaaacatgtaaacacttttcaaaagatgttgtttcatgttgggaaaccaaaatctgaaggaagaaggaaatcagatg |
53578820 |
T |
|
| Q |
318 |
catgtgcagttcaagataaaaaatatgcaattgaggaaagagcaacacatgtgagtcaaatgaaacgttttgcaagtggacgtgacacttttgctaattt |
417 |
Q |
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| T |
53578821 |
catgtgcagttcaagataaaaaatatgcaattgaggaaagagcaacacatgtgagtcaaatgaaacgttttgcaagtggacgtgacacttttgctaattt |
53578920 |
T |
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| Q |
418 |
tgattggaaggctcaagtagcaccagaagaaatagataattactattctgatgaagagagaatgcaaag |
486 |
Q |
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| T |
53578921 |
tgattggaaggctcaagtagcaccagaagaaatagataattactattctgatgaagagagaatgcaaag |
53578989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 15524884 - 15524935
Alignment:
| Q |
155 |
gaacccacttcaccaaaaatatcgtgcatgggacaaatcaagcacaagaaga |
206 |
Q |
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| T |
15524884 |
gaacccacttcaccaaaaatatcgtgcatgggagagatcaagcttaagaaga |
15524935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 362 - 484
Target Start/End: Complemental strand, 18818544 - 18818419
Alignment:
| Q |
362 |
acacatgtgagtcaaatgaaacgttttgcaagtggacgt---gacacttttgctaattttgattggaaggctcaagtagcaccagaagaaatagataatt |
458 |
Q |
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| T |
18818544 |
acacatgtgagtcgattgaaaagttttgcaagtggttgttgcgacacttttgttagttttgattggaaggctcatgtagttgcagaggaaatatataatt |
18818445 |
T |
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| Q |
459 |
actattctgatgaagagagaatgcaa |
484 |
Q |
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| |||| ||||||||||| |||||| |
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| T |
18818444 |
attatttggatgaagagaggatgcaa |
18818419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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