View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_low_15 (Length: 505)
Name: NF3545_low_15
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 39299636 - 39299905
Alignment:
| Q |
19 |
cctttctcggccacaacttgtcctgttcccattcctctgttcatttctttcacatgtggtgttccagaaaccactttggttcggctatcaagtttttctc |
118 |
Q |
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| T |
39299636 |
cctttctctgccacaacttgtcctgttcccattcctctgttcatttctttcacatgtggtgttccagaaaccactttggttcggctatcaagtttttctc |
39299735 |
T |
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| Q |
119 |
tatcatctgttaaaccttttgattccatttgaaactttcccacatcacgaaaaccaccaaaatcttcttttccacctactctgtttcctgctacatttgc |
218 |
Q |
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| T |
39299736 |
tatcatcggttaaaccttttgattccatttgaaactttcccacatcacgaacaccaccaaaatcttct---------------tttcctgctacatttgc |
39299820 |
T |
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| Q |
219 |
actatcacgaacatgtgcacgatcaaggtaactttgattctcgttacgatcaggaagagactgaaagtttgaaccaagttcatgg |
303 |
Q |
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| T |
39299821 |
actatcacgaacatgtgcacgatcaaggtaactttgattctcgttacgatcaggaagagactgaaagtttgaaccaagttcatgg |
39299905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 318 - 495
Target Start/End: Original strand, 39300154 - 39300331
Alignment:
| Q |
318 |
tcctcttccaccaatatctccaatggcttttcctgcatgatctttgttcatttcaccaccttgtaatgcttcaatgctaccatgtggtggttccttgtct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39300154 |
tcctcttccaccaatatctccaatggcttttcctgcatgatctttgttcatttcaccaccttgtaatgcttcaatgctaccatgtggtggttccttgtct |
39300253 |
T |
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| Q |
418 |
accactgtaagttgttcaaaatgagttgtcatctttgggactctgtctttttcaacatgaatatctctctcgtctgtg |
495 |
Q |
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| T |
39300254 |
accactgtaagttgttcaaaatgggtagtcatctttgggactctgtctttttcaacatgaatatctctctcgtttgtg |
39300331 |
T |
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