View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3545_low_16 (Length: 473)
Name: NF3545_low_16
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 14 - 459
Target Start/End: Complemental strand, 7158259 - 7157813
Alignment:
| Q |
14 |
agatataaaagaaaagagtattggtgcaggaggaggaaaagaggaaaataacgggagctacctgatccgtggagaagaagatgtaaggacatctaagcaa |
113 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7158259 |
agatataaaagaaaagagtattggtacaggaagaggaaaagaggaaaataacgggagttacctgatccgtggagaagaagatgtaaggacatctaagcaa |
7158160 |
T |
|
| Q |
114 |
tttttgccagggatgtattcgtgagtctggtgaccagtacttatcttccacgaccatttaggctaatggttcaattaagaagttcacataataacacagg |
213 |
Q |
| |
|
||||| | ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7158159 |
ttttttctagggatgtattggtgagtctggtgaccagtacttatcttccacggccatttaggctaatggttcaattaagaagttcacataataacacagg |
7158060 |
T |
|
| Q |
214 |
aaactttttcttcacagtcctcctgtgagatgttaagattataaatacacataagaattctctgttaaactattatgtgtata-nnnnnnnnnaattttg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7158059 |
aaactttttcttcacagtcctcctgtgagatgttaagattataaatacacacaagaattctctgttaaactattatgtgtatatattttttttaattttg |
7157960 |
T |
|
| Q |
313 |
ttcagaactatacttccggtttatcttatcgagagagggaaagataaacaatagaatgaaaaagaaagaatgacgtggttgcacgactttgtgataagaa |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7157959 |
ttcagaactatacttccggtttatcttatcgagagagggaaagataaacaatagaatgaaaaagaaagaatgatgtggttgcacgactttgtgataagaa |
7157860 |
T |
|
| Q |
413 |
tctgtgtctgagatcaagggaattgtaacctccaaggatgtggagta |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7157859 |
tctgtgtctgagatcaagggaattgtaacctccaaggatgtggagta |
7157813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University