View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_low_18 (Length: 462)
Name: NF3545_low_18
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 16 - 341
Target Start/End: Complemental strand, 37924045 - 37923719
Alignment:
| Q |
16 |
gttctttcctttcaacgttatatgtatacatgcaactaggctagttggtatttgtcgtctcattagctaggcagggtcacgagagattcccaacacatca |
115 |
Q |
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| T |
37924045 |
gttctttcctttcaacgttatatgtatacatgcaactaggctagttggtatttgtcgtctcattagctaggcagggtcacgagagattcccaacacatca |
37923946 |
T |
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| Q |
116 |
tgtgtaggtaacaa-tccataaaaacaaactttgaatgctacggtggtatctagagtttttcttagtagagcaccatattctttgtttgtgcacaattat |
214 |
Q |
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| T |
37923945 |
tgtgtaggtaacaaatccataaaaacaaactttgaatgctacggtggtatctagagcttttcttcatagagcaccatattgtttatttgtgcacaattat |
37923846 |
T |
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| Q |
215 |
aaagactaatcttttgagttgataggaaaataattaaaagtaaaattctctcaagaaatttaatattgttgaattcttatatctgaatttaaacttggga |
314 |
Q |
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| T |
37923845 |
aaagactaatcttttgagttgataggaaaataattaaaagtaaaattctctcaagaaatttaatattgttgaattctcatatctacatttaaacttagga |
37923746 |
T |
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| Q |
315 |
tctttagttgagttgaaagttatctgt |
341 |
Q |
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| T |
37923745 |
tctttaattgagttgaaaggtatctgt |
37923719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 392 - 452
Target Start/End: Complemental strand, 37923698 - 37923638
Alignment:
| Q |
392 |
tttgcttgatgtgtatcaacatctgatcccgtgatataattagatcattttcttacctatg |
452 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
37923698 |
tttgtttgatgtgtatcaacatccgatcccgtgatataattagatcattttcttaactatg |
37923638 |
T |
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