View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_low_21 (Length: 447)
Name: NF3545_low_21
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 431
Target Start/End: Original strand, 32701573 - 32701996
Alignment:
| Q |
13 |
cctgtgttgtgattgtgtgttgagaacaaataacatgtgctgttatatggttgttgcttgttggggtaagcttatacccaagtcaataaaatttgcagca |
112 |
Q |
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| T |
32701573 |
cctgtgttgtgattgtgtgttgggaacaaataacatgtgctgttgtatggttgttgcttgttggggtaagcttatacacagctcaataaaatttgcagca |
32701672 |
T |
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| Q |
113 |
taaaattgctaaatgagt-----aaatgaaatgaaataaaccagctcaattattggcagtgccagaaagaaagatttagaaatcaactatcacacttcac |
207 |
Q |
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| T |
32701673 |
taaaattgctaaatgagtaaatgaaatgaaatgaaataaaccagctcaattattggcagtgccagaaagaaagatttagaaatcaactatcacacatcac |
32701772 |
T |
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| Q |
208 |
gcctgctttgtagtaatgtactctactctaggacatgacagctgaaattgaactg--------catctctagttgtaaccagttgttttgggaatttata |
299 |
Q |
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| T |
32701773 |
gcctgctttgtagcaatgtactctagt--------tgacagctgaaattgaactgcatttcttcatctctagttgtaaccagttgttttgggaatttata |
32701864 |
T |
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| Q |
300 |
agtataatttttattttattttctcacatagatacatccattaaacactttgaaaaaattaaatagaaatactaatgtaataatagatttgattagtaga |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32701865 |
agtataatttttattttattttctcacatagatacatccattaaacactttgaaaaaattaaatagaaacactaatgtaataatagatttgattagtaga |
32701964 |
T |
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| Q |
400 |
gactgtggtcctctgatctttaggttctatct |
431 |
Q |
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| T |
32701965 |
gactgtggtcctctgatctttaggttctatct |
32701996 |
T |
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