View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_low_23 (Length: 427)
Name: NF3545_low_23
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 30957307 - 30956898
Alignment:
| Q |
1 |
taatacaaaaagttattctaatagtacttcaagtatcaaaattgcaaacacatccaagtttagtcggtttggttcttgaatatcttgatcggcaatttta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30957307 |
taatacaaaaagttattctaatagtacttcaagtatcaaaattgcaaacacatccaagtttagtcggtttggttcttgaatatcttgatcggcaatttta |
30957208 |
T |
|
| Q |
101 |
atgctaggcaccgagtgtgtcactcttgcccaatttgcaatgataaattcttaaactatgaattacagctgttaggggatcaaagtcttgcaatttcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30957207 |
atgctaggcaccgagtgtgtcactcttgcccaatttgcaatgataaattcttaaactatgaattacagctgttaggggatcaaagtcttgcaatttcttt |
30957108 |
T |
|
| Q |
201 |
taatcaaaatgtagttgaaatgataacaacattgacagagttcgcatttcagagagtgcaatgtcccaaggaactcaggccaaccatgaaaacagtgaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30957107 |
taatcaaaatgtagttgaaatgataacaacattgacagagttcgcatttcagagagtgcaatgtcccaaggaactcaggccaaccatgaaaacagtgaca |
30957008 |
T |
|
| Q |
301 |
gagttggcatttcaaaatatagtaatatgattcatattagtgattttatcacatgttttgagccacttgtagacatcttgcaagaaactcgtctgttcat |
400 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30957007 |
gagttagcatttcaaaatatagtaatatgattcatattagtgattttatcacatgttttgagccacttgtagacatcttgcaagaaactcgtctgttcat |
30956908 |
T |
|
| Q |
401 |
tgaagtttac |
410 |
Q |
| |
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|||||||||| |
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|
| T |
30956907 |
tgaagtttac |
30956898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 90 - 291
Target Start/End: Complemental strand, 30962906 - 30962704
Alignment:
| Q |
90 |
cggcaattttaatgctaggcaccgagtgtgtcactcttgcccaatttgcaatga-taaattcttaaactatgaattacagctgttaggggatcaaagtct |
188 |
Q |
| |
|
|||||| |||||||| |||||| || |||||||||||| ||||||||||||| |||| |||||||| | ||||||||| || ||| |||||||||||| |
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| T |
30962906 |
cggcaagtttaatgcaaggcacggaacatgtcactcttgctcaatttgcaatgagtaaaatcttaaacaaggaattacagatgctagtggatcaaagtct |
30962807 |
T |
|
| Q |
189 |
tgcaatttcttttaatcaaaatgtagttgaaatgataacaacattgacagagttcgcatttcagagagtgcaatgtcccaaggaactcaggccaaccatg |
288 |
Q |
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| ||||||||||||| |||||||||| ||||||||||||||| |||| ||||| ||||||||| | ||||| ||||||||||||||||||||||||||| |
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| T |
30962806 |
tcaaatttcttttaataaaaatgtagtcgaaatgataacaacagtgactgagttagcatttcagtgtgtgcagtgtcccaaggaactcaggccaaccatg |
30962707 |
T |
|
| Q |
289 |
aaa |
291 |
Q |
| |
|
||| |
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|
| T |
30962706 |
aaa |
30962704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 92 - 291
Target Start/End: Complemental strand, 30932560 - 30932360
Alignment:
| Q |
92 |
gcaattttaatgctaggcaccgagtgtgtcactcttgcccaatttgcaatga-taaattcttaaactatgaattacagctgttaggggatcaaagtcttg |
190 |
Q |
| |
|
|||| |||||||| |||||||||| ||||| |||||||| |||||||| ||| |||| |||||||| | |||||||||||| ||| ||| ||||||||| |
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|
| T |
30932560 |
gcaagtttaatgcaaggcaccgagcgtgtcgctcttgccgaatttgcattgagtaaaatcttaaacaaggaattacagctgctagtggaccaaagtcttc |
30932461 |
T |
|
| Q |
191 |
caatttcttttaatcaaaatgtagttgaaatgataacaacattgacagagttcgcatttcagagagtgcaatgtcccaaggaactcaggccaaccatgaa |
290 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||| |||| ||||| ||||||||| | ||||| ||||||||||||||||||||||||||||| |
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|
| T |
30932460 |
aaatttcttttaacaaaaatgtagtggaaatgataacaacggtgactgagttagcatttcagtgtgtgcagtgtcccaaggaactcaggccaaccatgaa |
30932361 |
T |
|
| Q |
291 |
a |
291 |
Q |
| |
|
| |
|
|
| T |
30932360 |
a |
30932360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 30966441 - 30966358
Alignment:
| Q |
1 |
taatacaaaaagttattctaatagtacttcaa-gtatcaaaattgcaaacacatccaagtttagtcggtttggttcttgaatat |
83 |
Q |
| |
|
||||||| |||| | ||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
30966441 |
taatacagaaagatgttctaatagtaattcaatgtatcaaaattgcaaacacatccaactttagtcggttttgttcttgaatat |
30966358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 30936149 - 30936066
Alignment:
| Q |
1 |
taatacaaaaagttattctaatagtacttcaa-gtatcaaaattgcaaacacatccaagtttagtcggtttggttcttgaatat |
83 |
Q |
| |
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||||||| ||| ||||||||| |||||| || ||||||| ||||||||||||||||| ||||||| ||||||||||| ||||| |
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|
| T |
30936149 |
taatacacaaaaatattctaatcgtacttgaatgtatcaacattgcaaacacatccaaatttagtcagtttggttcttaaatat |
30936066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 30946827 - 30946773
Alignment:
| Q |
318 |
tatagtaatatgattcatattagtgattttatcaca--tgttttgagccacttgt |
370 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| |||| ||||||||||||||||| |
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|
| T |
30946827 |
tatagtaatacgattcattttagtgattttaccacatctgttttgagccacttgt |
30946773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 30946724 - 30946682
Alignment:
| Q |
368 |
tgtagacatcttgcaagaaactcgtctgttcattgaagtttac |
410 |
Q |
| |
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|||||||||||||||||||||| |||| ||| ||||||||||| |
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|
| T |
30946724 |
tgtagacatcttgcaagaaacttgtctattctttgaagtttac |
30946682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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