View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3545_low_25 (Length: 419)
Name: NF3545_low_25
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 34 - 403
Target Start/End: Original strand, 8342234 - 8342607
Alignment:
| Q |
34 |
cataactgaaattcctcttgattattattgaaatataagtagcaatctgctagttacatttgagaacctcttcgatttatagag--tgaattggcgaggt |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
8342234 |
cataactgaaattcctcttgattattattgaaatataagtagcaatctgctagttacatttgagaacctcttcgatttatagagagtgaattggtgaggt |
8342333 |
T |
|
| Q |
132 |
atcaattctatcgaaaagtgaggccggaagacagagggtgtgtctaatatgattggcctcggagttg--tgcctccaaaacgacaggagacggcacatcc |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
8342334 |
atcaattctatcgaaaagtgaggccggaagacagagggtgtgtctgatatgattggcctcggagtggcatgcctccaaaacgacaggagacggcacatcc |
8342433 |
T |
|
| Q |
230 |
accaccgttggaggtggaggcaacaacagtatccactgcgtttctattaaaaagacaacatggttaaactaggccttttggaaacgttccatttatgagt |
329 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
8342434 |
accaccattggaggtggaggcaacaacagtatccactgcgtttctattaaaaagacaacatggttaagctaggccatttggaaacgttccatttatgagt |
8342533 |
T |
|
| Q |
330 |
cgttcgtgagatttgtatgacacctatgtcgtgcacattagcatttctctgttgcaaattaacttggagatttt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8342534 |
cgttcgtgagatttgtatgacacctatgtcgtgcacattagcatttctctgttgcaaattaacttggagatttt |
8342607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 3228315 - 3228110
Alignment:
| Q |
34 |
cataactgaaattcctcttgattattattgaaatataagtagcaatctgctagttacatttgagaacctcttcgatttat--agagtgaattggcgaggt |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3228315 |
cataactgaaattcctcttgattattattgaaatataagtagcaatctgccagttacatctgggaacctcttcgatttatagagagtgaattggcgaggt |
3228216 |
T |
|
| Q |
132 |
atcaattctatcgaaaagtgaggccggaagacagagggtgtgtctaatatgattggcctcggagttg--tgcctccaaaacgacaggagacggcacatcc |
229 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||| | ||||||||||| |||||||| |||||||||| |
|
|
| T |
3228215 |
atcaattctattgaaaagtgaggtcggaagacaga-ggtgtttctgatatgattggcctcggagtggcatgcctccaaaatgacaggagtcggcacatcc |
3228117 |
T |
|
| Q |
230 |
accaccg |
236 |
Q |
| |
|
||||||| |
|
|
| T |
3228116 |
accaccg |
3228110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University