View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3545_low_26 (Length: 406)

Name: NF3545_low_26
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3545_low_26
NF3545_low_26
[»] chr2 (8 HSPs)
chr2 (1-333)||(4095961-4096282)
chr2 (324-392)||(4096967-4097035)
chr2 (311-362)||(8757553-8757604)
chr2 (313-350)||(37767800-37767837)
chr2 (313-350)||(37966585-37966622)
chr2 (310-350)||(15260304-15260344)
chr2 (313-385)||(37966367-37966439)
chr2 (310-350)||(45376255-45376295)
[»] scaffold0504 (1 HSPs)
scaffold0504 (314-392)||(11159-11237)
[»] chr7 (11 HSPs)
chr7 (313-357)||(39875825-39875869)
chr7 (312-362)||(8459613-8459663)
chr7 (316-362)||(21839144-21839190)
chr7 (311-350)||(6427208-6427247)
chr7 (312-362)||(27866548-27866598)
chr7 (312-350)||(48314395-48314433)
chr7 (313-350)||(9792766-9792803)
chr7 (313-350)||(41750115-41750152)
chr7 (313-350)||(46260126-46260163)
chr7 (309-350)||(49069245-49069286)
chr7 (313-365)||(43444635-43444687)
[»] scaffold0019 (1 HSPs)
scaffold0019 (316-365)||(71596-71645)
[»] chr6 (7 HSPs)
chr6 (313-362)||(2241829-2241878)
chr6 (316-350)||(20029264-20029298)
chr6 (313-362)||(2165311-2165360)
chr6 (313-362)||(2176944-2176993)
chr6 (313-350)||(23632671-23632708)
chr6 (313-362)||(31517191-31517240)
chr6 (313-357)||(16328717-16328761)
[»] chr4 (7 HSPs)
chr4 (313-385)||(37022272-37022344)
chr4 (313-357)||(48494928-48494972)
chr4 (313-362)||(42490920-42490969)
chr4 (313-362)||(46173550-46173599)
chr4 (313-350)||(51734667-51734704)
chr4 (313-357)||(7146147-7146191)
chr4 (314-350)||(17367446-17367482)
[»] chr1 (6 HSPs)
chr1 (313-357)||(14983784-14983828)
chr1 (312-355)||(47059908-47059951)
chr1 (317-350)||(21432680-21432713)
chr1 (313-362)||(45272171-45272220)
chr1 (313-357)||(3826831-3826875)
chr1 (313-385)||(46903481-46903553)
[»] chr8 (10 HSPs)
chr8 (313-352)||(35500985-35501024)
chr8 (313-350)||(3155843-3155880)
chr8 (313-362)||(5740796-5740845)
chr8 (312-357)||(9047086-9047131)
chr8 (313-362)||(18538386-18538435)
chr8 (313-350)||(21526315-21526352)
chr8 (313-350)||(43066628-43066665)
chr8 (313-386)||(45405806-45405879)
chr8 (313-357)||(1739808-1739852)
chr8 (313-385)||(7325726-7325798)
[»] chr5 (2 HSPs)
chr5 (335-385)||(32379917-32379967)
chr5 (312-357)||(41210529-41210574)
[»] chr3 (4 HSPs)
chr3 (335-385)||(27162457-27162507)
chr3 (313-350)||(41448210-41448247)
chr3 (313-362)||(48490524-48490573)
chr3 (311-339)||(9099512-9099540)
[»] scaffold0286 (1 HSPs)
scaffold0286 (313-362)||(17049-17098)
[»] scaffold0194 (1 HSPs)
scaffold0194 (313-350)||(29795-29832)


Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 4095961 - 4096282
Alignment:
Q  1 tgaaacaaatgttttggagaaaccgatggtgaatttatttacgtgtctcctaacttgtttccttctttctacattatacatttaagagtctggtcccact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4095961 tgaaacaaatgttttggagaaaccgatggtgaatttatttacgtgtctcctaacttgtttccttctttctacattatacatttaagagtatggtcccact 4096060  T
Q  101 tgaactgcaaagtattagtagctcaaaaattagattagatcagctaagcttttgtttttgcctatataatccaaattttgattagtatatttaagagtaa 200  Q
    ||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4096061 tgaactgcaaagtattagtagctcaaaaattaga-------------gcttttgtttttgcctatataatccaaattttgattagtaaatttaagagtaa 4096147  T
Q  201 cttatgattagatggaagatatatgagtttgatgttttattattggtgagcgacacaagagaagtattgtaacttgtaatgtaacnnnnnnnctttggta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||        |||||||    
T  4096148 cttatgattagatggaagatatatgagtttgatgttttattattggtgagcgacacaagagaagtgttgtaacttgtaatgtaacttttttt-tttggta 4096246  T
Q  301 cc---ttgtaaagttgagaaatgatatttatacaac 333  Q
    ||   |||||||||||||||||||||||||||||||    
T  4096247 ccatgttgtaaagttgagaaatgatatttatacaac 4096282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 392
Target Start/End: Original strand, 4096967 - 4097035
Alignment:
Q  324 tttatacaaccacttttaaacaactttatctctcgtacttacgtgatgttgttatcctctcttcttttt 392  Q
    |||||||||  | |||| ||||||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  4096967 tttatacaatgatttttgaacaactttctctctcgtactcacgtgatgttgttatcctctcttattttt 4097035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 8757553 - 8757604
Alignment:
Q  311 ttgagaaatgatatttatacaaccacttttaaacaactttatctctcgtact 362  Q
    |||||||||| ||||| |||||||| ||||| ||||||||||||||| ||||    
T  8757553 ttgagaaatgttatttgtacaaccatttttatacaactttatctctcatact 8757604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 37767837 - 37767800
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaacttt 350  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  37767837 gagaaatgatatttatacaaccactttttgacaacttt 37767800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 37966585 - 37966622
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaacttt 350  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  37966585 gagaaatgatatttatacaaccattttaaaacaacttt 37966622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 15260304 - 15260344
Alignment:
Q  310 gttgagaaatgatatttatacaaccacttttaaacaacttt 350  Q
    |||||||||||||||||  ||||||||||||| ||||||||    
T  15260304 gttgagaaatgatatttgaacaaccacttttagacaacttt 15260344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 385
Target Start/End: Original strand, 37966367 - 37966439
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctcgtacttacgtgatgttgttatcctctct 385  Q
    |||||||||||||| |||||||| |||   |||||||| |||||| |||| || ||||| | |||||||||||    
T  37966367 gagaaatgatatttgtacaaccaatttgtgacaactttttctctcatactcacatgatggtcttatcctctct 37966439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 45376295 - 45376255
Alignment:
Q  310 gttgagaaatgatatttatacaaccacttttaaacaacttt 350  Q
    ||||||||||||||||| |||||||||||||  ||||||||    
T  45376295 gttgagaaatgatatttgtacaaccactttttgacaacttt 45376255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 314 - 392
Target Start/End: Original strand, 11159 - 11237
Alignment:
Q  314 agaaatgatatttatacaaccacttttaaacaactttatctctcgtacttacgtgatgttgttatcctctcttcttttt 392  Q
    ||||||||||||| |||||||| |||| |||||||||||||||  ||||||| |||| |||||||| ||| || |||||    
T  11159 agaaatgatatttgtacaaccatttttgaacaactttatctcttatacttacatgatattgttatcatctttttttttt 11237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 39875869 - 39875825
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctc 357  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||    
T  39875869 gagaaatgatatttatacaaccactttttaacaactttctctctc 39875825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 362
Target Start/End: Original strand, 8459613 - 8459663
Alignment:
Q  312 tgagaaatgatatttatacaaccacttttaaacaactttatctctcgtact 362  Q
    ||||||||||||||| ||||||||||||| ||||||||| |||||| ||||    
T  8459613 tgagaaatgatatttgtacaaccactttttaacaactttctctctcatact 8459663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 21839190 - 21839144
Alignment:
Q  316 aaatgatatttatacaaccacttttaaacaactttatctctcgtact 362  Q
    |||||||||||||||||||||||||  ||||||||||||||| ||||    
T  21839190 aaatgatatttatacaaccactttttgacaactttatctctcatact 21839144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 350
Target Start/End: Original strand, 6427208 - 6427247
Alignment:
Q  311 ttgagaaatgatatttatacaaccacttttaaacaacttt 350  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  6427208 ttgagaaatgatatttatacaaccactttttgacaacttt 6427247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 362
Target Start/End: Complemental strand, 27866598 - 27866548
Alignment:
Q  312 tgagaaatgatatttatacaaccacttttaaacaactttatctctcgtact 362  Q
    ||||||||||||||| |||||||| ||||  ||||||||||||||| ||||    
T  27866598 tgagaaatgatatttgtacaaccatttttgtacaactttatctctcatact 27866548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 48314433 - 48314395
Alignment:
Q  312 tgagaaatgatatttatacaaccacttttaaacaacttt 350  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  48314433 tgagaaatgatatttgtacaaccactttttaacaacttt 48314395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 9792766 - 9792803
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaacttt 350  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  9792766 gagaaatgatatttgaacaaccacttttaaacaacttt 9792803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 41750115 - 41750152
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaacttt 350  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  41750115 gagaaatgatatttaaacaaccatttttaaacaacttt 41750152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 46260163 - 46260126
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaacttt 350  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  46260163 gagaaatgatatttatacaaccattttaaaacaacttt 46260126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 49069245 - 49069286
Alignment:
Q  309 agttgagaaatgatatttatacaaccacttttaaacaacttt 350  Q
    |||||||||||||||||| |||||||||||||  ||||||||    
T  49069245 agttgagaaatgatatttgtacaaccactttttgacaacttt 49069286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 43444635 - 43444687
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctcgtacttac 365  Q
    |||||||||||||| ||||||||||||   |||||||| |||||| |||||||    
T  43444635 gagaaatgatatttgtacaaccactttatgacaactttctctctcatacttac 43444687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 71645 - 71596
Alignment:
Q  316 aaatgatatttatacaaccacttttaaacaactttatctctcgtacttac 365  Q
    ||||||||||| ||||||||| ||| |||||||||||||||| |||||||    
T  71645 aaatgatatttgtacaaccacctttgaacaactttatctctcatacttac 71596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 2241878 - 2241829
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctcgtact 362  Q
    ||||||||||||||||||||||||||||  |||||||| |||||| ||||    
T  2241878 gagaaatgatatttatacaaccactttttgacaactttttctctcatact 2241829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 350
Target Start/End: Original strand, 20029264 - 20029298
Alignment:
Q  316 aaatgatatttatacaaccacttttaaacaacttt 350  Q
    ||||||||||||||||||||||||| |||||||||    
T  20029264 aaatgatatttatacaaccactttttaacaacttt 20029298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 2165360 - 2165311
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctcgtact 362  Q
    |||||||||||||| |||||||| ||||  ||||||||||||||| ||||    
T  2165360 gagaaatgatatttgtacaaccatttttgtacaactttatctctcatact 2165311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 2176993 - 2176944
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctcgtact 362  Q
    |||||||||||||| |||||||| ||||  ||||||||||||||| ||||    
T  2176993 gagaaatgatatttgtacaaccatttttgtacaactttatctctcatact 2176944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 23632708 - 23632671
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaacttt 350  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  23632708 gagaaatgatatttgaacaaccacttttaaacaacttt 23632671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 31517240 - 31517191
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctcgtact 362  Q
    |||||||||||||| |||||||||||||  |||||||| |||||| ||||    
T  31517240 gagaaatgatatttgtacaaccactttttgacaactttttctctcatact 31517191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 16328761 - 16328717
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctc 357  Q
    |||||||||||||| |||||||| |||  ||||||||||||||||    
T  16328761 gagaaatgatatttgtacaaccattttataacaactttatctctc 16328717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 385
Target Start/End: Original strand, 37022272 - 37022344
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctcgtacttacgtgatgttgttatcctctct 385  Q
    |||||||||||||| |||||||| ||| | ||||||||||||||| |||| || ||||| | ||||| |||||    
T  37022272 gagaaatgatatttgtacaaccattttgatacaactttatctctcatactcacatgatggtcttatcatctct 37022344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 48494972 - 48494928
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctc 357  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||    
T  48494972 gagaaatgatatttgaacaaccactttttaacaactttatctctc 48494928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 42490920 - 42490969
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctcgtact 362  Q
    |||||||||||||| |||||||||||||  |||||||| |||||| ||||    
T  42490920 gagaaatgatatttgtacaaccactttttgacaactttctctctcatact 42490969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 46173550 - 46173599
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctcgtact 362  Q
    |||||||||||||| ||||||||||||   |||||||| |||||||||||    
T  46173550 gagaaatgatatttgtacaaccactttgtgacaactttctctctcgtact 46173599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 51734704 - 51734667
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaacttt 350  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  51734704 gagaaatgatatttgaacaaccacttttaaacaacttt 51734667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 7146191 - 7146147
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctc 357  Q
    ||||||||||||||  ||||||| |||||||||||||| ||||||    
T  7146191 gagaaatgatatttgaacaaccatttttaaacaactttttctctc 7146147  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 17367446 - 17367482
Alignment:
Q  314 agaaatgatatttatacaaccacttttaaacaacttt 350  Q
    |||||||||||||||||||||||||||  ||||||||    
T  17367446 agaaatgatatttatacaaccactttttgacaacttt 17367482  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 14983784 - 14983828
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctc 357  Q
    |||||||||||||| ||||||||||||| ||||||||| ||||||    
T  14983784 gagaaatgatatttgtacaaccactttttaacaactttctctctc 14983828  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 355
Target Start/End: Complemental strand, 47059951 - 47059908
Alignment:
Q  312 tgagaaatgatatttatacaaccacttttaaacaactttatctc 355  Q
    ||||||||||||||| |||||||| |||| ||||||||||||||    
T  47059951 tgagaaatgatatttgtacaaccattttttaacaactttatctc 47059908  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 350
Target Start/End: Complemental strand, 21432713 - 21432680
Alignment:
Q  317 aatgatatttatacaaccacttttaaacaacttt 350  Q
    ||||||||||||||||||| ||||||||||||||    
T  21432713 aatgatatttatacaaccaattttaaacaacttt 21432680  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 45272220 - 45272171
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctcgtact 362  Q
    |||||||||||||| |||||||||||||  |||||||| |||||| ||||    
T  45272220 gagaaatgatatttgtacaaccactttttgacaactttctctctcatact 45272171  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 3826875 - 3826831
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctc 357  Q
    |||||||||||||| |||||| | |||| ||||||||||||||||    
T  3826875 gagaaatgatatttgtacaactaatttttaacaactttatctctc 3826831  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 385
Target Start/End: Original strand, 46903481 - 46903553
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctcgtacttacgtgatgttgttatcctctct 385  Q
    |||||||||||||| |||||||| ||| | |||||||| |||||| |||| || | ||||| |||| ||||||    
T  46903481 gagaaatgatatttgtacaaccattttgatacaactttctctctcatactcacattatgtttttattctctct 46903553  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 35501024 - 35500985
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttat 352  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  35501024 gagaaatgatatttatacaaccactttttgacaactttat 35500985  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 3155843 - 3155880
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaacttt 350  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  3155843 gagaaatgatatttgtacaaccactttttaacaacttt 3155880  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 5740845 - 5740796
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctcgtact 362  Q
    |||||||||||||| |||||||||||||  |||||||| |||||| ||||    
T  5740845 gagaaatgatatttgtacaaccactttttgacaactttttctctcatact 5740796  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 357
Target Start/End: Complemental strand, 9047131 - 9047086
Alignment:
Q  312 tgagaaatgatatttatacaaccacttttaaacaactttatctctc 357  Q
    ||||||||||||||| |||||||||||||  |||||||| ||||||    
T  9047131 tgagaaatgatatttgtacaaccactttttgacaactttctctctc 9047086  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 18538386 - 18538435
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctcgtact 362  Q
    ||||||||||| || |||||||||||||  ||||||||||||||| ||||    
T  18538386 gagaaatgatacttgtacaaccactttttgacaactttatctctcatact 18538435  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 21526352 - 21526315
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaacttt 350  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  21526352 gagaaatgatatttgtacaaccactttttaacaacttt 21526315  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 43066665 - 43066628
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaacttt 350  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  43066665 gagaaatgatatttgtacaaccactttttaacaacttt 43066628  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 386
Target Start/End: Complemental strand, 45405879 - 45405806
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctcgtacttacgtgatgttgttatcctctctt 386  Q
    |||||||||||||| |||||||| ||| | |||||||| |||||| |||| || | ||||| |||| |||||||    
T  45405879 gagaaatgatatttgtacaaccattttgatacaactttttctctcatactcacattatgtttttattctctctt 45405806  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 1739808 - 1739852
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctc 357  Q
    ||||||||||||||| ||||||| ||||  |||||||||||||||    
T  1739808 gagaaatgatatttacacaaccattttttgacaactttatctctc 1739852  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 385
Target Start/End: Original strand, 7325726 - 7325798
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctcgtacttacgtgatgttgttatcctctct 385  Q
    |||||||||||||| |||| |||||||  ||||||||| |||||| |||| || | ||||| |||| ||||||    
T  7325726 gagaaatgatatttgtacatccactttataacaactttctctctcatactcacattatgtttttattctctct 7325798  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 385
Target Start/End: Complemental strand, 32379967 - 32379917
Alignment:
Q  335 acttttaaacaactttatctctcgtacttacgtgatgttgttatcctctct 385  Q
    |||||| ||||||||| |||||| |||| || |||||||||||||||||||    
T  32379967 acttttgaacaactttctctctcatactcacatgatgttgttatcctctct 32379917  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 357
Target Start/End: Complemental strand, 41210574 - 41210529
Alignment:
Q  312 tgagaaatgatatttatacaaccacttttaaacaactttatctctc 357  Q
    ||||||||||||||||||||||||  ||| ||||||||| ||||||    
T  41210574 tgagaaatgatatttatacaaccatattttaacaactttctctctc 41210529  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 385
Target Start/End: Complemental strand, 27162507 - 27162457
Alignment:
Q  335 acttttaaacaactttatctctcgtacttacgtgatgttgttatcctctct 385  Q
    |||||| ||||||||| |||||| |||| || |||||||||||||||||||    
T  27162507 acttttgaacaactttctctctcatactcacatgatgttgttatcctctct 27162457  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 41448247 - 41448210
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaacttt 350  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  41448247 gagaaatgatatttgtacaaccatttttaaacaacttt 41448210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 48490573 - 48490524
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctcgtact 362  Q
    |||||||||||||| |||||||||||||  |||||||| |||||| ||||    
T  48490573 gagaaatgatatttgtacaaccacttttgtacaactttctctctcatact 48490524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 339
Target Start/End: Complemental strand, 9099540 - 9099512
Alignment:
Q  311 ttgagaaatgatatttatacaaccacttt 339  Q
    |||||||||||||||||||||||||||||    
T  9099540 ttgagaaatgatatttatacaaccacttt 9099512  T

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Target: scaffold0286 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 17049 - 17098
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaactttatctctcgtact 362  Q
    |||||||||||||| |||||||| ||||  ||||||||||||||| ||||    
T  17049 gagaaatgatatttgtacaaccatttttgtacaactttatctctcatact 17098  T

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Target: scaffold0194 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 29832 - 29795
Alignment:
Q  313 gagaaatgatatttatacaaccacttttaaacaacttt 350  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  29832 gagaaatgatatttatacaaccactttttgacaacttt 29795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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