View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_low_3 (Length: 680)
Name: NF3545_low_3
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 626; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 21 - 670
Target Start/End: Complemental strand, 22219445 - 22218796
Alignment:
| Q |
21 |
gagtcaacattttatcctaagaaaatgtattaataatagagacatttgcttgaatatattaataatctatctcatatataaagatctcaatcaccgtcat |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22219445 |
gagtcaacattttatcctaagaaaatgtattaataatagagacatttgcttgaatatattaataatctatctcatatataaagatctcaatcaccgtcat |
22219346 |
T |
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| Q |
121 |
ctcaatcgcactatgatcactcgggttaattatgtaagctagatgagtagttttatgagattggattagttaaacttttgtagtgaatgatccttatgtg |
220 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22219345 |
ctcaatcgcactatgatcacttgggttaattatgtaagctagatgagtagttttatgagattggattagttaaacttttgtagtgaatgatccttatgtg |
22219246 |
T |
|
| Q |
221 |
atgaatgcatgggccaaaacataccaagataacaagcatgtgaagtttcttgctaatcgttcagccatgtacactctttctttctaaaaggttagctctc |
320 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22219245 |
atgaatgcatgggccaaaacataccgagataacaagcatgtgaagtttcttgctaatcgttcagccatgtacactctttctttctaaaaggttagctctc |
22219146 |
T |
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| Q |
321 |
ttgtttgaaaacctcaagtgtgaagattcgtaatattgaaaatggaatagaatccttaaggtcctctaatgaatatgtttaattttgctatgatatgtct |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22219145 |
ttgtttgaaaacctcaagtgtgaagattcgtaatattgaaaatggaacagaatccttaaggtcctctaatgaatatgtttaattttgctatgatatgtct |
22219046 |
T |
|
| Q |
421 |
atcattacctattagtgctgtttttagcttgtgtgtcttgtgttgatctagtactttaattttatagttatatctgagttgttatattgaagagtttgtg |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22219045 |
atcattacctattagtgctgtttttagcttgtgtgtcttgtgttgatctagtactttaattttatagttatatctgagttgttatattgaagagtttgtg |
22218946 |
T |
|
| Q |
521 |
attggatgttactaaataggttgaggaatctgataacggcgtgaagagcactagctatcgtgcgaaatacttctgcacttgagtcggcccctgctgcatc |
620 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
22218945 |
attggatgttactaaataggttgaggaatctgataagggcgtgaagagcactagctatcgtgtgaaatgcttctgcacttgagtcggcccctgctgcatc |
22218846 |
T |
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| Q |
621 |
tccccttgagaggtaacatacctcacatgcatttgaatggaacccctttg |
670 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22218845 |
tccccttgagaggtaacatacctcacatgcatttgaatggaacccctttg |
22218796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 33103397 - 33103307
Alignment:
| Q |
135 |
gatcactcgggttaattatgtaagctagatgagtagttttatgagattggattagttaaacttttgtagtgaatgatccttatgtgatgaatgc |
228 |
Q |
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| T |
33103397 |
gatcacttggattaattatgtaagctagatgactaattt---gagattagattaattaaacttttgtagtgaatgatccttatgtgatgaatgc |
33103307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 33125895 - 33125804
Alignment:
| Q |
196 |
ttttgtagtgaatgatccttatgtgatgaatgcatgggccaaaacataccaagataacaagcatgtgaagtttcttgctaatcgttcagcca |
287 |
Q |
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| T |
33125895 |
ttttgtagtcaatgatccatttgtgctgaattcatgggccaagacattcccagagaacaagcatgtcaagttccttgctgatggttctgcca |
33125804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 5341305 - 5341356
Alignment:
| Q |
57 |
tagagacatttgctt-gaatatattaataatctatctcatatataaagatct |
107 |
Q |
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| T |
5341305 |
tagagacatttgctttgaatatattaataatctatctcatatataaagatct |
5341356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 631 - 668
Target Start/End: Complemental strand, 14678414 - 14678377
Alignment:
| Q |
631 |
aggtaacatacctcacatgcatttgaatggaacccctt |
668 |
Q |
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| T |
14678414 |
aggtaacatacctcgcatacatttgaatggaacccctt |
14678377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 550
Target Start/End: Original strand, 18365574 - 18365615
Alignment:
| Q |
509 |
gaagagtttgtgattggatgttactaaataggttgaggaatc |
550 |
Q |
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| T |
18365574 |
gaagagtttgtgattggttgttactaaacaggttgaagaatc |
18365615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 550
Target Start/End: Complemental strand, 36597351 - 36597310
Alignment:
| Q |
509 |
gaagagtttgtgattggatgttactaaataggttgaggaatc |
550 |
Q |
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||||||||||||||||| |||||||||| ||||||| ||||| |
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| T |
36597351 |
gaagagtttgtgattggttgttactaaacaggttgaagaatc |
36597310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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