View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3545_low_30 (Length: 387)

Name: NF3545_low_30
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3545_low_30
NF3545_low_30
[»] chr1 (7 HSPs)
chr1 (1-373)||(6109910-6110296)
chr1 (30-86)||(7218118-7218174)
chr1 (5-77)||(49517012-49517087)
chr1 (30-77)||(25006087-25006134)
chr1 (30-77)||(30371118-30371165)
chr1 (30-86)||(17269220-17269276)
chr1 (41-77)||(37295771-37295807)
[»] chr2 (5 HSPs)
chr2 (2-82)||(35755550-35755633)
chr2 (30-118)||(22681196-22681285)
chr2 (30-77)||(11513868-11513915)
chr2 (39-86)||(37276725-37276772)
chr2 (37-86)||(13869139-13869188)
[»] chr8 (7 HSPs)
chr8 (39-86)||(34551099-34551146)
chr8 (30-77)||(34770862-34770909)
chr8 (1-77)||(42597339-42597418)
chr8 (1-86)||(1561217-1561300)
chr8 (5-86)||(2091708-2091787)
chr8 (39-77)||(7645957-7645995)
chr8 (40-77)||(9834842-9834879)
[»] chr7 (4 HSPs)
chr7 (30-118)||(38010684-38010773)
chr7 (1-77)||(24909607-24909681)
chr7 (3-77)||(5006562-5006639)
chr7 (1-53)||(45344477-45344530)
[»] chr6 (4 HSPs)
chr6 (1-77)||(29274282-29274361)
chr6 (39-86)||(32386607-32386654)
chr6 (39-85)||(9732455-9732501)
chr6 (2-83)||(33787792-33787876)
[»] chr3 (4 HSPs)
chr3 (1-77)||(20669562-20669636)
chr3 (1-83)||(402589-402673)
chr3 (30-75)||(48397616-48397661)
chr3 (40-76)||(51197790-51197826)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-77)||(27514-27593)
[»] chr5 (2 HSPs)
chr5 (35-77)||(19138772-19138814)
chr5 (29-74)||(41016148-41016193)
[»] chr4 (2 HSPs)
chr4 (2-87)||(32920443-32920529)
chr4 (1-33)||(31005958-31005990)


Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 6110296 - 6109910
Alignment:
Q  1 cttatgtataagctatttctataaacagaaaaacaaattcaaattgttttcatttaaggtataagttgttttcataatttatcctgataacttgcagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6110296 cttatgtataagctatttctataaacagaaaaacaaattcaaattgttttcatttaaggtataagttgttttcataatttatcctgataacttgcagaaa 6110197  T
Q  101 taagctacaaatagcttacatgataatttgttaccagaaactcccccaaagagtctcaaagtgcttacgtcagtaaataagt----------caattcaa 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||          ||||||||    
T  6110196 taagctacaaatagcttacatgataatttgttaccagaaactcccccaaacagtctcaaagtgcttccgtcagtaaataagttgaaataagtcaattcaa 6110097  T
Q  191 acatgttattgacgcatgcctatttttagtaacagataacaaaagtcattctagatacacaacataaaaatcaaaatctattcagaattaagttttcacc 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6110096 acatgttattgacgcatgcctatttttagtaacagataacaaaagtcattctagatacacaacataaaaatcaaaatctattcagaattaagttttcacc 6109997  T
Q  291 tcgaaacgcaatttttaacctcaaattaatgaattcaaagtcgattttatctac----catacacttaataactgcaatgaattatt 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    || ||||||||||||||||||||||||||    
T  6109996 tcgaaacgcaatttttaacctcaaattaatgaattcaaagtcgattttatctaccaaacaaacacttaataactgcaatgaattatt 6109910  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 7218174 - 7218118
Alignment:
Q  30 aaaacaaattcaaattgttttcatttaaggtataagttgttttcataatttatcctg 86  Q
    |||| ||| ||||||||||||||| |||| ||||||||||||||||||  |||||||    
T  7218174 aaaataaagtcaaattgttttcatataagctataagttgttttcataacctatcctg 7218118  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 49517012 - 49517087
Alignment:
Q  5 tgtataagctatttctataa--acaga-aaaacaaattcaaattgttttcatttaaggtataagttgttttcataa 77  Q
    |||||||| |||||||||||  | ||| |||| ||| |||||||||||||||||||| |||||| |||||||||||    
T  49517012 tgtataagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcataa 49517087  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 25006134 - 25006087
Alignment:
Q  30 aaaacaaattcaaattgttttcatttaaggtataagttgttttcataa 77  Q
    |||| ||| ||||||||||||||| |||| ||||||||||||||||||    
T  25006134 aaaataaagtcaaattgttttcatataagctataagttgttttcataa 25006087  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 30371118 - 30371165
Alignment:
Q  30 aaaacaaattcaaattgttttcatttaaggtataagttgttttcataa 77  Q
    |||| ||| ||||||||||||||| |||| ||||||||||||||||||    
T  30371118 aaaataaactcaaattgttttcatataagctataagttgttttcataa 30371165  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 17269220 - 17269276
Alignment:
Q  30 aaaacaaattcaaattgttttcatttaaggtataagttgttttcataatttatcctg 86  Q
    |||| ||| ||||||||||||||| ||||  |||||||||||||||||  |||||||    
T  17269220 aaaataaagtcaaattgttttcatataagcaataagttgttttcataagctatcctg 17269276  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 37295807 - 37295771
Alignment:
Q  41 aaattgttttcatttaaggtataagttgttttcataa 77  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  37295807 aaattgttttcgtttaagctataagttgttttcataa 37295771  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 35755633 - 35755550
Alignment:
Q  2 ttatgtataagctatttctataaacaga---aaaacaaattcaaattgttttcatttaaggtataagttgttttcataatttat 82  Q
    ||||||||||||||||||||||| || |   |||| ||| ||||||||||||||| |||| |||||||||||||||||| ||||    
T  35755633 ttatgtataagctatttctataatcaaatagaaaataaagtcaaattgttttcatgtaagctataagttgttttcataagttat 35755550  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 22681285 - 22681196
Alignment:
Q  30 aaaacaaattcaaattgttttcatttaaggtataagttgttttcataatttatcct-gataacttgcagaaataagctacaaatagctta 118  Q
    ||||||||  |||||||||||||| |||| |||||| |||||||||||| |||||| || |||||   ||||||||||| ||| ||||||    
T  22681285 aaaacaaagccaaattgttttcatataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagctta 22681196  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 11513868 - 11513915
Alignment:
Q  30 aaaacaaattcaaattgttttcatttaaggtataagttgttttcataa 77  Q
    |||| ||| ||||||||||||||| |||| ||||||||||||||||||    
T  11513868 aaaataaagtcaaattgttttcatataagctataagttgttttcataa 11513915  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 37276725 - 37276772
Alignment:
Q  39 tcaaattgttttcatttaaggtataagttgttttcataatttatcctg 86  Q
    ||||| ||||||||| |||| |||||||||||||||||| ||||||||    
T  37276725 tcaaactgttttcatataagttataagttgttttcataagttatcctg 37276772  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 13869188 - 13869139
Alignment:
Q  37 attcaaattgttttcatttaaggtataagttgttttcataatttatcctg 86  Q
    ||||||||| ||||||| |||| |||||| ||||||||||| ||||||||    
T  13869188 attcaaattattttcatctaagctataagctgttttcataagttatcctg 13869139  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 34551099 - 34551146
Alignment:
Q  39 tcaaattgttttcatttaaggtataagttgttttcataatttatcctg 86  Q
    |||||||||||||||||||| |||||||||||||| ||| ||||||||    
T  34551099 tcaaattgttttcatttaagttataagttgttttcttaagttatcctg 34551146  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 34770862 - 34770909
Alignment:
Q  30 aaaacaaattcaaattgttttcatttaaggtataagttgttttcataa 77  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||    
T  34770862 aaaataaagtcaaattgttttcatttaagctataagttgttttcataa 34770909  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 42597339 - 42597418
Alignment:
Q  1 cttatgtataagctatttctataa--acaga-aaaacaaattcaaattgttttcatttaaggtataagttgttttcataa 77  Q
    ||||||||||||||||||||||||  | ||| |||| ||| | |||||||||||||  ||| ||||||||||||||||||    
T  42597339 cttatgtataagctatttctataacaaaagataaaataaagtaaaattgttttcatgcaagctataagttgttttcataa 42597418  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 1561217 - 1561300
Alignment:
Q  1 cttatgtataagctatttctataaacagaaaaacaaattcaaattgttttcatttaaggtataagttgttttcataatttatcctg 86  Q
    |||||||||||| |||||||||||   |||| | ||| |||||||||||| || |||| || |||||||||||||||  |||||||    
T  1561217 cttatgtataagttatttctataac--gaaagataaactcaaattgttttaatataagctacaagttgttttcataagctatcctg 1561300  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 2091708 - 2091787
Alignment:
Q  5 tgtataagctatttctataaacagaaaaacaaattcaaattgttttcatttaaggtataagttgttttcataatttatcctg 86  Q
    |||||||| |||||||||||   |||| ||||| |||||||||||| || |||| || |||||||||||||||  |||||||    
T  2091708 tgtataagttatttctataac--gaaatacaaactcaaattgttttaatataagctacaagttgttttcataagctatcctg 2091787  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 7645957 - 7645995
Alignment:
Q  39 tcaaattgttttcatttaaggtataagttgttttcataa 77  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  7645957 tcaaattgttttcatgtaagctataagttgttttcataa 7645995  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 9834879 - 9834842
Alignment:
Q  40 caaattgttttcatttaaggtataagttgttttcataa 77  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  9834879 caaattgttttcatataagctataagttgttttcataa 9834842  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 38010684 - 38010773
Alignment:
Q  30 aaaacaaattcaaattgttttcatttaaggtataagttgttttcataatttatcct-gataacttgcagaaataagctacaaatagctta 118  Q
    ||||||||  |||||||||||||| |||| |||||| |||||||||||| |||||| || |||||   ||||||||||| ||| ||||||    
T  38010684 aaaacaaagccaaattgttttcatataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagctta 38010773  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 24909607 - 24909681
Alignment:
Q  1 cttatgtataagctatttctataaacagaaaaacaaattcaaattgttttcatttaaggtataagttgttttcataa 77  Q
    |||||||||||||||||||| ||| || ||||  ||| ||||||| ||||||| |||| ||||||||||||||||||    
T  24909607 cttatgtataagctatttctttaa-ca-aaaagtaaagtcaaattattttcatataagctataagttgttttcataa 24909681  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 5006639 - 5006562
Alignment:
Q  3 tatgtataagctatttctataa--acaga-aaaacaaattcaaattgttttcatttaaggtataagttgttttcataa 77  Q
    ||||||||||||||| ||||||  | ||| |||| ||| ||||| ||||||||| |||||||||| ||||||||||||    
T  5006639 tatgtataagctattcctataacaaaagataaaataaagtcaaactgttttcatataaggtataaattgttttcataa 5006562  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 45344530 - 45344477
Alignment:
Q  1 cttatgtataagctatttctataaacaga-aaaacaaattcaaattgttttcat 53  Q
    ||||||||||||||||||||| ||  ||| |||||||| |||||||||||||||    
T  45344530 cttatgtataagctatttctacaacaagataaaacaaagtcaaattgttttcat 45344477  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 29274361 - 29274282
Alignment:
Q  1 cttatgtataagctatttctata--aacaga-aaaacaaattcaaattgttttcatttaaggtataagttgttttcataa 77  Q
    |||||||||||||||||||||||  || ||| |||| ||| ||||||||||||||| |||| |||||  |||||||||||    
T  29274361 cttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataaactgttttcataa 29274282  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 32386654 - 32386607
Alignment:
Q  39 tcaaattgttttcatttaaggtataagttgttttcataatttatcctg 86  Q
    ||||||||||||||| ||||||||| ||||||||||| | ||||||||    
T  32386654 tcaaattgttttcatataaggtatacgttgttttcattagttatcctg 32386607  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 9732455 - 9732501
Alignment:
Q  39 tcaaattgttttcatttaaggtataagttgttttcataatttatcct 85  Q
    |||||||||||||||  ||||||||||||||||||| || |||||||    
T  9732455 tcaaattgttttcatgcaaggtataagttgttttcacaagttatcct 9732501  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 33787876 - 33787792
Alignment:
Q  2 ttatgtataagctatttctataaacaga---aaaacaaattcaaattgttttcatttaaggtataagttgttttcataatttatc 83  Q
    |||||||||| ||||||||||||  | |   |||||||| |||||||| |||||| |||| |||||| ||||||||||| |||||    
T  33787876 ttatgtataaactatttctataacaaaatataaaacaaagtcaaattgatttcatataagttataagctgttttcataagttatc 33787792  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 20669562 - 20669636
Alignment:
Q  1 cttatgtataagctatttctataaacagaaaaacaaattcaaattgttttcatttaaggtataagttgttttcataa 77  Q
    |||||||||||||||||||||| |||| ||| |||| || ||||||||||||| |||| ||||| | ||||||||||    
T  20669562 cttatgtataagctatttctat-aacaaaaatacaagtt-aaattgttttcatataagctataattcgttttcataa 20669636  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 402673 - 402589
Alignment:
Q  1 cttatgtataagctatttctat--aaacagaaaaacaaattcaaattgttttcatttaaggtataagttgttttcataatttatc 83  Q
    ||||||||||||||||||||||  ||| ||| ||  ||||| ||||||||||| | |||| |||||| |||||| ||||| ||||    
T  402673 cttatgtataagctatttctatagaaaaagataattaaatttaaattgttttcgtataagttataagctgtttttataatctatc 402589  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 48397616 - 48397661
Alignment:
Q  30 aaaacaaattcaaattgttttcatttaaggtataagttgttttcat 75  Q
    |||| ||| |||||||||||| ||||||| ||||||||||||||||    
T  48397616 aaaataaagtcaaattgtttttatttaagctataagttgttttcat 48397661  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 51197826 - 51197790
Alignment:
Q  40 caaattgttttcatttaaggtataagttgttttcata 76  Q
    |||||||||||||| |||| |||||||||||||||||    
T  51197826 caaattgttttcatataagttataagttgttttcata 51197790  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 27514 - 27593
Alignment:
Q  1 cttatgtataagctatttctataaacagaa----aaacaaattcaaattgttttcatttaaggtataagttgttttcataa 77  Q
    |||||||||||| ||||||||||| |||||    ||| ||| ||||||||||||||| |||  ||||||||||||||||||    
T  27514 cttatgtataagttatttctataa-cagaagataaaataaagtcaaattgttttcatataaactataagttgttttcataa 27593  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 19138814 - 19138772
Alignment:
Q  35 aaattcaaattgttttcatttaaggtataagttgttttcataa 77  Q
    ||||||||||||||||||  |||| ||||||||||||||||||    
T  19138814 aaattcaaattgttttcagataagctataagttgttttcataa 19138772  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 41016148 - 41016193
Alignment:
Q  29 aaaaacaaattcaaattgttttcatttaaggtataagttgttttca 74  Q
    ||||| ||||||||| ||||||||| |||| |||||||||||||||    
T  41016148 aaaaataaattcaaactgttttcatataagctataagttgttttca 41016193  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 32920529 - 32920443
Alignment:
Q  2 ttatgtataagctatttctataaacaga-aaaacaaattcaaattgttttcatttaaggtataagttgttttcataatttatcctga 87  Q
    ||||| ||||||||||| |||||  ||| |||| ||| |||||| ||||| ||  ||| |||||||||||||||||| |||||||||    
T  32920529 ttatggataagctatttttataacaagataaaataaagtcaaatcgttttaatagaagctataagttgttttcataagttatcctga 32920443  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 31005958 - 31005990
Alignment:
Q  1 cttatgtataagctatttctataaacagaaaaa 33  Q
    ||||||||||||||||||||||||| |||||||    
T  31005958 cttatgtataagctatttctataaaaagaaaaa 31005990  T

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