View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3545_low_35 (Length: 339)

Name: NF3545_low_35
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3545_low_35
NF3545_low_35
[»] chr6 (42 HSPs)
chr6 (90-306)||(26802278-26802494)
chr6 (88-339)||(27229066-27229317)
chr6 (88-339)||(26655823-26656074)
chr6 (88-339)||(26761794-26762045)
chr6 (90-306)||(27724980-27725196)
chr6 (90-306)||(28780975-28781191)
chr6 (88-306)||(27698629-27698847)
chr6 (88-306)||(27718514-27718732)
chr6 (90-306)||(27611137-27611353)
chr6 (88-339)||(27338167-27338418)
chr6 (88-339)||(27398907-27399158)
chr6 (92-306)||(28786116-28786330)
chr6 (92-306)||(28792237-28792451)
chr6 (116-321)||(27604825-27605030)
chr6 (85-339)||(31284119-31284373)
chr6 (88-303)||(27593158-27593373)
chr6 (85-303)||(27678777-27678995)
chr6 (114-339)||(26884023-26884248)
chr6 (135-332)||(27531306-27531503)
chr6 (90-245)||(26622812-26622967)
chr6 (90-245)||(26728790-26728945)
chr6 (112-306)||(26646337-26646531)
chr6 (112-306)||(26752305-26752499)
chr6 (148-339)||(26142759-26142950)
chr6 (88-303)||(27677752-27677967)
chr6 (85-303)||(27706540-27706758)
chr6 (148-339)||(25481636-25481827)
chr6 (148-339)||(25579613-25579804)
chr6 (92-245)||(26861454-26861607)
chr6 (148-339)||(26055820-26056011)
chr6 (148-339)||(26075790-26075981)
chr6 (88-228)||(27427816-27427956)
chr6 (148-339)||(25538434-25538625)
chr6 (148-339)||(26048739-26048930)
chr6 (148-339)||(26069908-26070099)
chr6 (114-231)||(26823700-26823817)
chr6 (128-321)||(28234438-28234631)
chr6 (5-43)||(26888296-26888334)
chr6 (5-47)||(26888563-26888605)
chr6 (296-339)||(27427708-27427751)
chr6 (5-43)||(26888155-26888193)
chr6 (87-214)||(28098596-28098726)
[»] scaffold0349 (3 HSPs)
scaffold0349 (90-306)||(3557-3773)
scaffold0349 (88-306)||(14490-14708)
scaffold0349 (88-181)||(8061-8154)
[»] scaffold0277 (2 HSPs)
scaffold0277 (90-306)||(13767-13983)
scaffold0277 (92-306)||(4806-5020)
[»] scaffold1254 (1 HSPs)
scaffold1254 (88-306)||(52-270)
[»] scaffold0419 (1 HSPs)
scaffold0419 (88-306)||(7359-7577)
[»] chr4 (11 HSPs)
chr4 (88-321)||(18724192-18724425)
chr4 (90-321)||(18731611-18731842)
chr4 (88-321)||(18699507-18699740)
chr4 (90-321)||(18679674-18679905)
chr4 (90-245)||(18655660-18655815)
chr4 (88-228)||(17989250-17989390)
chr4 (88-228)||(18073599-18073739)
chr4 (296-339)||(17989142-17989185)
chr4 (296-339)||(18073804-18073847)
chr4 (5-46)||(18682966-18683007)
chr4 (5-45)||(18692281-18692321)
[»] chr1 (3 HSPs)
chr1 (112-306)||(28164484-28164678)
chr1 (115-245)||(28127863-28127993)
chr1 (88-303)||(268482-268697)
[»] chr8 (1 HSPs)
chr8 (86-245)||(29273966-29274125)
[»] scaffold0003 (2 HSPs)
scaffold0003 (88-228)||(59407-59547)
scaffold0003 (296-339)||(59612-59655)
[»] scaffold0038 (1 HSPs)
scaffold0038 (128-321)||(34599-34792)


Alignment Details
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 42)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 90 - 306
Target Start/End: Original strand, 26802278 - 26802494
Alignment:
Q  90 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 189  Q
    |||||||||||||  | |||| ||| ||||||||| |||| |||| |||||||||||||||||| |||||||||||||||| ||||| ||||||||||||    
T  26802278 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 26802377  T
Q  190 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatc 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| | |||||||||||||  |||||||||||||||    
T  26802378 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatc 26802477  T
Q  290 aaggccattgaagaatc 306  Q
    |||||||||||||||||    
T  26802478 aaggccattgaagaatc 26802494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 88 - 339
Target Start/End: Original strand, 27229066 - 27229317
Alignment:
Q  88 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 187  Q
    |||||||||||| ||| |||||| ||||||||||||| |||||| || |||||||||||||||||| || ||||||||||||| ||||| |||| |||||    
T  27229066 tctcatggctatacaatcaccttcctcttcctcttcattttcctttggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggt 27229165  T
Q  188 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 287  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||| | |||||||| ||||  ||||||||||||     
T  27229166 tttaccggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagacgaaatcacaccatcactcg 27229265  T
Q  288 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaacta 339  Q
    ||||||||||||| |||||   ||| || |||||||||||||||||||||||    
T  27229266 tcaaggccattgacgaatctcggatttttattcccatattttctgccaacta 27229317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 88 - 339
Target Start/End: Original strand, 26655823 - 26656074
Alignment:
Q  88 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 187  Q
    |||||||||||| ||| |||||| ||| ||||||||| |||||||||  || |  ||||||||||| |||||||||||||||| |||||  ||| |||||    
T  26655823 tctcatggctatacaatcaccttcctcatcctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccggcacggt 26655922  T
Q  188 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 287  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| | ||||||||  ||||||||||||||  ||||||||||||     
T  26655923 tttaccggcaatctctacaaggctcttattgataagggaatccatactttcattgatgacaatgatcttctcagaggagatgaaatcacaccatcactcg 26656022  T
Q  288 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaacta 339  Q
    | ||||||||||||||||||| ||| || |||||||||||||||||||||||    
T  26656023 ttaaggccattgaagaatccaggatttttattcccatattttctgccaacta 26656074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 88 - 339
Target Start/End: Original strand, 26761794 - 26762045
Alignment:
Q  88 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 187  Q
    |||||||||||| ||| |||||| ||| ||||||||| |||||||||  || |  ||||||||||| |||||||||||||||| |||||  ||| |||||    
T  26761794 tctcatggctatacaatcaccttcctcatcctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccggcacggt 26761893  T
Q  188 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 287  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| | ||||||||  ||||||||||||||  ||||||||||||     
T  26761894 tttaccggcaatctctacaaggctcttattgataagggaatccatactttcattgatgacaatgatcttctcagaggagatgaaatcacaccatcactcg 26761993  T
Q  288 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaacta 339  Q
    | ||||||||||||||||||| ||| || |||||||||||||||||||||||    
T  26761994 ttaaggccattgaagaatccaggatttttattcccatattttctgccaacta 26762045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 90 - 306
Target Start/End: Complemental strand, 27725196 - 27724980
Alignment:
Q  90 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 189  Q
    |||||||||| ||| |||||| ||| ||||||||| ||||||||| |||||||||||||||||| || ||||||||||||| ||||| |||| |||||||    
T  27725196 tcatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttt 27725097  T
Q  190 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatc 289  Q
    ||| || ||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||| | |||||||||||||  |||||||||||| ||    
T  27725096 taccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctc 27724997  T
Q  290 aaggccattgaagaatc 306  Q
    ||||||||||| |||||    
T  27724996 aaggccattgatgaatc 27724980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 90 - 306
Target Start/End: Original strand, 28780975 - 28781191
Alignment:
Q  90 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 189  Q
    ||||||||||||||  ||||| ||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||| ||||| |||  |||||||    
T  28780975 tcatggctatgcaattaccttcctcttcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttt 28781074  T
Q  190 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatc 289  Q
    ||| |||||||||||||||||||||| ||||||||||||| | || |||||||||| | |||||||| | |||||||||||||  |||||||||||| ||    
T  28781075 taccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctc 28781174  T
Q  290 aaggccattgaagaatc 306  Q
    |||||||| ||||||||    
T  28781175 aaggccatcgaagaatc 28781191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 88 - 306
Target Start/End: Complemental strand, 27698847 - 27698629
Alignment:
Q  88 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 187  Q
    |||||||||||| ||| |||||| ||| ||| ||||| ||||||||| ||||||||||||||||||  ||||||||||||||| ||||| |||| |||||    
T  27698847 tctcatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcggcacggt 27698748  T
Q  188 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 287  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||| | |||||||||||||  ||||||||||||     
T  27698747 tttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcc 27698648  T
Q  288 tcaaggccattgaagaatc 306  Q
    ||||||||||||| |||||    
T  27698647 tcaaggccattgatgaatc 27698629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 88 - 306
Target Start/End: Complemental strand, 27718732 - 27718514
Alignment:
Q  88 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 187  Q
    |||||||||||| ||| |||||| ||| ||||||||| | ||| ||| |||||||||||||||||| |||||||||||||||| ||||| |||| || ||    
T  27718732 tctcatggctatacaatcaccttcctcatcctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcggcacagt 27718633  T
Q  188 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 287  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||| | |||||||||||||  ||||||||||||     
T  27718632 tttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcc 27718533  T
Q  288 tcaaggccattgaagaatc 306  Q
    ||||||||||||| |||||    
T  27718532 tcaaggccattgatgaatc 27718514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 90 - 306
Target Start/End: Complemental strand, 27611353 - 27611137
Alignment:
Q  90 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 189  Q
    ||||||||||||||  | ||| |||||| |||||| ||||||||| |||||||||||||||||| |||||||||||||||| ||||| |||  |||||||    
T  27611353 tcatggctatgcaattagcttcctcttcttcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttt 27611254  T
Q  190 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatc 289  Q
    ||| || ||||||||||||||||||| |||||||||||||||||| |||||||||| | ||||||||   |||||||||||||  |||||||||||| ||    
T  27611253 taccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttccaagaggagatgaaatcacaccatcactcctc 27611154  T
Q  290 aaggccattgaagaatc 306  Q
    ||||||||||| |||||    
T  27611153 aaggccattgatgaatc 27611137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 88 - 339
Target Start/End: Complemental strand, 27338418 - 27338167
Alignment:
Q  88 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 187  Q
    |||||||||||||||| ||| || |||||||||||||||||||| ||  ||||  ||||| ||||| ||||||||||||| || ||||| ||  ||||||    
T  27338418 tctcatggctatgcaatcactttcctcttcctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattgacactctttacggt 27338319  T
Q  188 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 287  Q
    ||||| |||||||||||||||||||||||||||||||||||| | || |||||||||| | | |||||| | |||||||||||||  |||||||||||      
T  27338318 tttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgacaacgatcttgaaagaggagatgaaagcacaccatcacttg 27338219  T
Q  288 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaacta 339  Q
    |||||||||||||||| || | ||| || ||||||||||||||||| |||||    
T  27338218 tcaaggccattgaagagtctaggattttgattcccatattttctgcaaacta 27338167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 88 - 339
Target Start/End: Complemental strand, 27399158 - 27398907
Alignment:
Q  88 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 187  Q
    |||||||||||||||| ||| || |||||||||||||||||||| ||  ||||  ||||| ||||| ||||||||||||| || ||||| ||  ||||||    
T  27399158 tctcatggctatgcaatcactttcctcttcctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattgacactctttacggt 27399059  T
Q  188 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 287  Q
    ||||| |||||||||||||||||||||||||||||||||||| | || |||||||||| | | |||||| | |||||||||||||  |||||||||||      
T  27399058 tttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgacaacgatcttgaaagaggagatgaaagcacaccatcacttg 27398959  T
Q  288 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaacta 339  Q
    |||||||||||||||| || | ||| || ||||||||||||||||| |||||    
T  27398958 tcaaggccattgaagagtctaggattttgattcccatattttctgcaaacta 27398907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 92 - 306
Target Start/End: Original strand, 28786116 - 28786330
Alignment:
Q  92 atggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggtttta 191  Q
    |||||||| ||| |||||| ||| ||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| ||||| |||  |||||||||    
T  28786116 atggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggtttta 28786215  T
Q  192 cgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaa 291  Q
    | || ||||||||||||||||||| ||||||||||||| | || |||||||||| | |||||||| | |||||||||||||  |||||||||||| ||||    
T  28786216 ccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaa 28786315  T
Q  292 ggccattgaagaatc 306  Q
    |||||| ||||||||    
T  28786316 ggccatcgaagaatc 28786330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 92 - 306
Target Start/End: Original strand, 28792237 - 28792451
Alignment:
Q  92 atggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggtttta 191  Q
    |||||||| ||| |||||| ||| ||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| ||||| |||  |||||||||    
T  28792237 atggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggtttta 28792336  T
Q  192 cgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaa 291  Q
    | || ||||||||||||||||||| ||||||||||||| | || |||||||||| | |||||||| | |||||||||||||  |||||||||||| ||||    
T  28792337 ccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaa 28792436  T
Q  292 ggccattgaagaatc 306  Q
    |||||| ||||||||    
T  28792437 ggccatcgaagaatc 28792451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 116 - 321
Target Start/End: Complemental strand, 27605030 - 27604825
Alignment:
Q  116 tcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctctta 215  Q
    ||||||||| |||||||||||||||||||||||||||| || ||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||||||    
T  27605030 tcctcttcattttcctatgcattcacttaccaagtgttccttagttttaggggcactgacactcgatacggttttaccggcaatctctacaaggctctta 27604931  T
Q  216 ttgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatctt 315  Q
     |||||||||||| ||||| ||||||||||   ||||||||   |||||||||||||  |||||| ||||  ||||||||||||| ||||||| ||| ||    
T  27604930 ctgacaagggaattcataccttcattgatgaaaatgatcttcgaagaggagatgaaatcacaccagcacttctcaaggccattgatgaatccaggatttt 27604831  T
Q  316 cattcc 321  Q
     |||||    
T  27604830 tattcc 27604825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 85 - 339
Target Start/End: Original strand, 31284119 - 31284373
Alignment:
Q  85 aaatctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtac 184  Q
    ||||||||||||||||||| || ||| ||||||||||||||||||||||| |||||  |||||||| || || ||||| ||||| ||||||| ||||||     
T  31284119 aaatctcatggctatgcaatcatcttcctcttcctcttcaatttcctatgtattcaaataccaagtattccttagtttcaggggaagtgacactcggtat 31284218  T
Q  185 ggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcac 284  Q
    ||||| || |||||||||||||||||||||| ||||||||||||||| || ||||||||||    ||| ||| | ||||| |||||||  ||||||||||    
T  31284219 ggtttcaccggcaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatagtgaacttcaaagaggggatgaaatcacaccatcac 31284318  T
Q  285 tcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaacta 339  Q
    ||  ||| ||||||||||| || | ||| || || ||| | ||||||||||||||    
T  31284319 tcgacaatgccattgaagagtctaggatttttatccccgtgttttctgccaacta 31284373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 88 - 303
Target Start/End: Complemental strand, 27593373 - 27593158
Alignment:
Q  88 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 187  Q
    |||||||||||||||| |||||| ||||||| |||||||||||||||  | ||  |||||||| || |||||||| || || ||||||| ||||||||||    
T  27593373 tctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggt 27593274  T
Q  188 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 287  Q
    || || |||||||||||||||||||||| ||||||||||||| | || |||||||||| | ||| |||| | |||||| ||||||  |||||||||||      
T  27593273 ttcaccggcaatctctacaaggctcttactgacaagggaatcaacaccttcattgatgacaatggtcttcaaagaggaaatgaaatcacaccatcacttc 27593174  T
Q  288 tcaaggccattgaaga 303  Q
    ||||||||||||||||    
T  27593173 tcaaggccattgaaga 27593158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 85 - 303
Target Start/End: Original strand, 27678777 - 27678995
Alignment:
Q  85 aaatctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtac 184  Q
    ||||||||||||||||||| |||||| ||||||| |||||||||||||||  | ||  |||||||| || |||||||| || || ||||||| |||||||    
T  27678777 aaatctcatggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaagtgacactcggtac 27678876  T
Q  185 ggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcac 284  Q
    ||||| || || ||||||||||||||||||| ||||||||||||| | || |||||||||    ||| |||| | |||||||||||||  ||||||||||    
T  27678877 ggtttcaccgggaatctctacaaggctcttactgacaagggaatcaacaccttcattgataagaatggtcttcaaagaggagatgaaatcacaccatcac 27678976  T
Q  285 tcatcaaggccattgaaga 303  Q
    |  ||||||||||||||||    
T  27678977 ttctcaaggccattgaaga 27678995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 114 - 339
Target Start/End: Original strand, 26884023 - 26884248
Alignment:
Q  114 cttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctct 213  Q
    ||||||||||| ||||||||| |||||||||||||||||| |||||||| || || ||||||| |||||| ||||| || || |||||||||||||||||    
T  26884023 cttcctcttcattttcctatggattcacttaccaagtgttcctcagtttcagaggaagtgacactcggtatggtttcactggaaatctctacaaggctct 26884122  T
Q  214 tattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatc 313  Q
    || | ||||||||||||| || ||||||||||   || |||||   ||||||   ||||  |||||||||||||||||||||||||||||||| |  ||     
T  26884123 tactaacaagggaatccacaccttcattgatgataatcatcttccaagaggaagcgaaatcacaccatcactcatcaaggccattgaagaatctagaatt 26884222  T
Q  314 ttcattcccatattttctgccaacta 339  Q
    || ||||| ||||||||| |||||||    
T  26884223 tttattccaatattttctaccaacta 26884248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 135 - 332
Target Start/End: Complemental strand, 27531503 - 27531306
Alignment:
Q  135 cattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatac 234  Q
    ||||||||||||||||||| |||||||||||||||   |||| |||  |||||||||| || ||||||||||||||||||| ||||||||||||| ||||    
T  27531503 cattcacttaccaagtgttcctcagttttaggggcgcggacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatctatac 27531404  T
Q  235 attcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctg 332  Q
     |||||||||| | |||||||| | |||||||||||||  ||||||||||| |  || ||||||||| |||| | ||| || |||||| |||||||||    
T  27531403 cttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactaaaaaatgccattgaaaaatctaggatttttattcccgtattttctg 27531306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 90 - 245
Target Start/End: Original strand, 26622812 - 26622967
Alignment:
Q  90 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 189  Q
    |||||||||||||| |||| | ||||||||||||||||||||||  |||||  ||||||||||| || ||||| || |||||||||| ||||||||||||    
T  26622812 tcatggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggtacggttt 26622911  T
Q  190 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatg 245  Q
     || || ||||||||||||||||||| ||||||||||||||| || ||||||||||    
T  26622912 cactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatg 26622967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 90 - 245
Target Start/End: Original strand, 26728790 - 26728945
Alignment:
Q  90 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 189  Q
    |||||||||||||| |||| | ||||||||||||||||||||||  |||||  ||||||||||| || ||||| || |||||||||| ||||||||||||    
T  26728790 tcatggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggtacggttt 26728889  T
Q  190 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatg 245  Q
     || || ||||||||||||||||||| ||||||||||||||| || ||||||||||    
T  26728890 cactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatg 26728945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 112 - 306
Target Start/End: Original strand, 26646337 - 26646531
Alignment:
Q  112 ctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggct 211  Q
    ||||||||||| ||||||||| | |||||| ||||| || || ||||  || ||||||||||||| |||  |||||||||| ||  ||||||||||||||    
T  26646337 ctcttcctctttaatttcctacggattcacctaccaggtcttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaaggct 26646436  T
Q  212 cttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatc 306  Q
    |||| |||||||||||| || || ||||||||||    ||||||| | |||||||||||||  ||||||||||||||||||||||||||||||||    
T  26646437 cttactgacaagggaattcacaccttcattgatgattgtgatcttaagagaggagatgaaatcacaccatcactcatcaaggccattgaagaatc 26646531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 112 - 306
Target Start/End: Original strand, 26752305 - 26752499
Alignment:
Q  112 ctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggct 211  Q
    ||||||||||| ||||||||| | |||||| ||||| || || ||||  || ||||||||||||| |||  |||||||||| ||  ||||||||||||||    
T  26752305 ctcttcctctttaatttcctacggattcacctaccaggtcttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaaggct 26752404  T
Q  212 cttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatc 306  Q
    |||| |||||||||||| || || ||||||||||    ||||||| | |||||||||||||  ||||||||||||||||||||||||||||||||    
T  26752405 cttactgacaagggaattcacaccttcattgatgattgtgatcttaagagaggagatgaaatcacaccatcactcatcaaggccattgaagaatc 26752499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 148 - 339
Target Start/End: Original strand, 26142759 - 26142950
Alignment:
Q  148 agtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggc 247  Q
    |||||| |||||||| ||||||||||||| |||  ||   ||||| || |||||||| ||||||||| ||||||||||||| | ||| ||||||||||      
T  26142759 agtgttcctcagtttcaggggcagtgacactcgcaacaaatttaccggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgat 26142858  T
Q  248 gatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaacta 339  Q
     |||||||| | |||||||||||||  |||||||||||  ||||||||||||||||||| | ||| || |||||||||||||||||||||||    
T  26142859 aatgatcttgaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttttattcccatattttctgccaacta 26142950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 88 - 303
Target Start/End: Complemental strand, 27677967 - 27677752
Alignment:
Q  88 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 187  Q
    |||||||||||||||| |||||| ||||||| |||||||||||||||  | ||  |||||||| || |||| ||| || || ||||||| ||||||||||    
T  27677967 tctcatggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcaatttcagaggaagtgacactcggtacggt 27677868  T
Q  188 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 287  Q
    || || |||||||||||||||||||||  ||||||||||||||| || ||||||||     |||| ||| | ||||| |||||||  |||||||||||      
T  27677867 ttcaccggcaatctctacaaggctcttgatgacaagggaatccacaccttcattgacaatcatgaacttcaaagaggggatgaaatcacaccatcacttc 27677768  T
Q  288 tcaaggccattgaaga 303  Q
    ||||||||||||||||    
T  27677767 tcaaggccattgaaga 27677752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 85 - 303
Target Start/End: Complemental strand, 27706758 - 27706540
Alignment:
Q  85 aaatctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtac 184  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||  | ||  |||||||| || |||||||| || ||  |||||| |||||||    
T  27706758 aaatctcatggctatgcaatcacctttctcttccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaggtgacactcggtac 27706659  T
Q  185 ggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcac 284  Q
    ||||| || |||||||||||||||||| ||  ||||||||||||||| || ||||||||     |||| ||| | ||| | |||||||  ||||||||||    
T  27706658 ggtttcacaggcaatctctacaaggcttttgatgacaagggaatccacaccttcattgacaatcatgaacttcaaagaagggatgaaatcacaccatcac 27706559  T
Q  285 tcatcaaggccattgaaga 303  Q
    |  ||||||||||||||||    
T  27706558 ttctcaaggccattgaaga 27706540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 148 - 339
Target Start/End: Original strand, 25481636 - 25481827
Alignment:
Q  148 agtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggc 247  Q
    |||||| |||| ||| ||||||||||||| |||  ||  |||||| || |||||||| ||||||||| ||||||||||||| | ||| ||||||||||      
T  25481636 agtgttcctcaatttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgaa 25481735  T
Q  248 gatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaacta 339  Q
     |||||||| | |||||||||||||  |||||||||||  ||||||||||||||||||| | ||| |  |||||||||||||||||||||||    
T  25481736 aatgatcttcaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttgtattcccatattttctgccaacta 25481827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 148 - 339
Target Start/End: Original strand, 25579613 - 25579804
Alignment:
Q  148 agtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggc 247  Q
    |||||| |||||||| || |||||||||| |||  ||  |||||| || |||||||| ||||||||| ||||||||||||| | ||| ||| ||||||      
T  25579613 agtgttcctcagtttcagaggcagtgacactcgcaacacttttaccggtaatctctataaggctcttgttgacaagggaattcgtaccttctttgatgat 25579712  T
Q  248 gatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaacta 339  Q
     |||||||| | |||||||||||||  |||||||||||  ||||||||||||||||||| | ||| || |||||||||||||||||||||||    
T  25579713 aatgatcttcaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttttattcccatattttctgccaacta 25579804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 92 - 245
Target Start/End: Original strand, 26861454 - 26861607
Alignment:
Q  92 atggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggtttta 191  Q
    |||||||||||| |||||| |||||||||||| |||||||||| |||||  ||||| || || |||||||| || || ||||||| |||||| |||||||    
T  26861454 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaggtattcctcagtttcagaggaagtgacactcggtatggtttta 26861553  T
Q  192 cgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatg 245  Q
    | || ||||||||||||||||||| |||||||||||| || || ||||| ||||    
T  26861554 ccggtaatctctacaaggctcttactgacaagggaattcacaccttcatggatg 26861607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 148 - 339
Target Start/End: Original strand, 26055820 - 26056011
Alignment:
Q  148 agtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggc 247  Q
    |||||| |||| ||| ||||||||||||| |||  ||  |||||| || |||||||| ||||||||| |||||||||||||  |||| ||||||||||      
T  26055820 agtgttcctcattttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattaatactttcattgatgaa 26055919  T
Q  248 gatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaacta 339  Q
     |||||||| | |||||||||||||  ||| |||||||  |||||||||| ||||||||   ||| || |||||||||||||||||||||||    
T  26055920 aatgatcttcaaagaggagatgaaatcacatcatcacttgtcaaggccatcgaagaatctgggatttttattcccatattttctgccaacta 26056011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 148 - 339
Target Start/End: Original strand, 26075790 - 26075981
Alignment:
Q  148 agtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggc 247  Q
    |||||| |||| ||| ||||||||||||| |||  ||  |||||| || |||||||| ||||||||| |||||||||||||  |||| ||||||||||      
T  26075790 agtgttcctcaatttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattaatactttcattgatgaa 26075889  T
Q  248 gatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaacta 339  Q
     |||||||| | |||||||||||||  ||| |||||||  |||||||||| ||||||||   ||| || |||||||||||||||||||||||    
T  26075890 aatgatcttcaaagaggagatgaaatcacatcatcacttgtcaaggccatcgaagaatctgggatttttattcccatattttctgccaacta 26075981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 88 - 228
Target Start/End: Complemental strand, 27427956 - 27427816
Alignment:
Q  88 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 187  Q
    ||||||||| ||||||  |||||||| |||||||||| ||||||||||||||| |||| | ||||| |||| || || |||||  |||| ||||||||||    
T  27427956 tctcatggccatgcaattacctttctattcctcttcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggt 27427857  T
Q  188 tttacgggcaatctctacaaggctcttattgacaagggaat 228  Q
    || || ||||||||||  |||||||||||||||||||||||    
T  27427856 ttcaccggcaatctcttgaaggctcttattgacaagggaat 27427816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 148 - 339
Target Start/End: Original strand, 25538434 - 25538625
Alignment:
Q  148 agtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggc 247  Q
    |||||| |||||||| ||||||||||||| |||  ||   ||||| || |||||||| ||||||||| |||||||||||||   ||| ||||| ||||      
T  25538434 agtgttcctcagtttcaggggcagtgacactcgcaacaaatttaccggtaatctctataaggctcttgttgacaagggaattagtactttcatagatgat 25538533  T
Q  248 gatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaacta 339  Q
     |||||||| | |||||||||||||  |||||||||||  |||||||||| |||||||| |  || || |||||||||||||||||||||||    
T  25538534 aatgatcttgaaagaggagatgaaatcacaccatcacttgtcaaggccatcgaagaatctagaatttttattcccatattttctgccaacta 25538625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 148 - 339
Target Start/End: Original strand, 26048739 - 26048930
Alignment:
Q  148 agtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggc 247  Q
    |||||| |||||||| ||||||||||||| |||  ||  |||||| || |||||||| |||||||| ||||||||||||||   ||| ||||||||||      
T  26048739 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctctcattgacaagggaatttgtactttcattgatgat 26048838  T
Q  248 gatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaacta 339  Q
     |||||||| | |||||||||||||  |||||   |||  |||||||||| |||||||| | ||| || |||||||||||||||||||||||    
T  26048839 aatgatcttgaaagaggagatgaaatcacacccaaacttgtcaaggccatggaagaatctaggatttttattcccatattttctgccaacta 26048930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 148 - 339
Target Start/End: Original strand, 26069908 - 26070099
Alignment:
Q  148 agtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggc 247  Q
    |||||| |||||||| ||||||||||||| |||  ||  |||||| || |||||||| |||||||| ||||||||||||||   ||| ||||||||||      
T  26069908 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctctcattgacaagggaatttgtactttcattgatgat 26070007  T
Q  248 gatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaacta 339  Q
     |||||||| | |||||||||||||  |||||   |||  |||||||||| |||||||| | ||| || |||||||||||||||||||||||    
T  26070008 aatgatcttgaaagaggagatgaaatcacacccaaacttgtcaaggccatggaagaatctaggatttttattcccatattttctgccaacta 26070099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 231
Target Start/End: Original strand, 26823700 - 26823817
Alignment:
Q  114 cttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctct 213  Q
    ||||||||||| |||| ||||  ||||  ||||||||||| ||||||||||| |||  ||||| |||||| |  ||||| ||||||||||||||||||||    
T  26823700 cttcctcttcagtttcatatgatttcaaataccaagtgtttctcagttttagaggcgctgacactcggtatgaatttaccggcaatctctacaaggctct 26823799  T
Q  214 tattgacaagggaatcca 231  Q
    ||  ||||||||||||||    
T  26823800 tacagacaagggaatcca 26823817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 321
Target Start/End: Original strand, 28234438 - 28234631
Alignment:
Q  128 tcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaa 227  Q
    ||||||| |||||| ||  | ||||| || |||||||| || ||||||| ||| || |||||||| |  |||||||| |  ||||||  | |||||||||    
T  28234438 tcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaa 28234537  T
Q  228 tccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcc 321  Q
    |||| || |||||||||| |   || ||| |  ||||||||||||  |||||||||||  |||||||||||||||| || | ||| ||||||||    
T  28234538 tccacaccttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcc 28234631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 26888296 - 26888334
Alignment:
Q  5 atattcaccaatccttatagagagacaaaatcagatgaa 43  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  26888296 atattcaccaatccttatagagagacaaaatcaaatgaa 26888334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 26888563 - 26888605
Alignment:
Q  5 atattcaccaatccttatagagagacaaaatcagatgaagata 47  Q
    |||||||||| ||||| ||||||||||||||||||||||||||    
T  26888563 atattcaccagtccttgtagagagacaaaatcagatgaagata 26888605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 27427751 - 27427708
Alignment:
Q  296 attgaagaatccacgatcttcattcccatattttctgccaacta 339  Q
    ||||||||||||| ||| || |||||||||||||||||||||||    
T  27427751 attgaagaatccaggattttgattcccatattttctgccaacta 27427708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 26888155 - 26888193
Alignment:
Q  5 atattcaccaatccttatagagagacaaaatcagatgaa 43  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  26888155 atattcaccaatccatatagagagtcaaaatcagatgaa 26888193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 28098726 - 28098596
Alignment:
Q  87 atctcatggctatgc---aaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggta 183  Q
    |||||||||||||||   || || ||| ||||| ||||||| | || |||| |||||| ||  | ||||| || | |||||||||||  |||| ||||||    
T  28098726 atctcatggctatgctccaatcatcttcctctttctcttcattctcttatggattcacctatgacgtgtttcttaattttaggggcaccgacactcggta 28098627  T
Q  184 cggttttacgggcaatctctacaaggctctt 214  Q
     |||||||| || ||||||||||| ||||||    
T  28098626 tggttttactggaaatctctacaaagctctt 28098596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 90 - 306
Target Start/End: Complemental strand, 3773 - 3557
Alignment:
Q  90 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 189  Q
    |||||||||| ||| |||||| ||| ||||||||| ||||||||| |||||||||||||||||| || ||||||||||||| ||||| |||| |||||||    
T  3773 tcatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttt 3674  T
Q  190 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatc 289  Q
    ||| || ||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||| | |||||||||||||  |||||||||||| ||    
T  3673 taccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctc 3574  T
Q  290 aaggccattgaagaatc 306  Q
    ||||||||||| |||||    
T  3573 aaggccattgatgaatc 3557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 88 - 306
Target Start/End: Complemental strand, 14708 - 14490
Alignment:
Q  88 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 187  Q
    |||||||||||| ||| |||||| ||| ||| ||||| ||||||||| ||||||||||||||||||  ||||||||||||||| ||||| |||| |||||    
T  14708 tctcatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcggcacggt 14609  T
Q  188 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 287  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||| | |||||||||||||  ||||||||||||     
T  14608 tttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcc 14509  T
Q  288 tcaaggccattgaagaatc 306  Q
    ||||||||||||| |||||    
T  14508 tcaaggccattgatgaatc 14490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 8154 - 8061
Alignment:
Q  88 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcgg 181  Q
    |||||||||||| ||| |||||| ||| ||||||||| | ||| ||| |||||||||||||||||| |||||||||||||||| ||||| ||||    
T  8154 tctcatggctatacaatcaccttcctcatcctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcgg 8061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 90 - 306
Target Start/End: Complemental strand, 13983 - 13767
Alignment:
Q  90 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 189  Q
    ||||||||||||||  ||||| ||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||| ||||| |||  |||||||    
T  13983 tcatggctatgcaattaccttcctcttcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttt 13884  T
Q  190 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatc 289  Q
    ||| |||||||||||||||||||||| ||||||||||||| | || |||||||||| | |||||||| | |||||||||||||  |||||||||||| ||    
T  13883 taccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctc 13784  T
Q  290 aaggccattgaagaatc 306  Q
    |||||||| ||||||||    
T  13783 aaggccatcgaagaatc 13767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 92 - 306
Target Start/End: Complemental strand, 5020 - 4806
Alignment:
Q  92 atggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggtttta 191  Q
    |||||||| ||| |||||| ||| ||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| ||||| |||  |||||||||    
T  5020 atggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcattgacactcgccacggtttta 4921  T
Q  192 cgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaa 291  Q
    | || ||||||||||||||||||| ||||||||||||| | || |||||||||| | |||||||| | |||||||||||||  |||||||| |||  |||    
T  4920 ccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatccctccgcaa 4821  T
Q  292 ggccattgaagaatc 306  Q
    ||||||||| |||||    
T  4820 ggccattgatgaatc 4806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 88 - 306
Target Start/End: Complemental strand, 270 - 52
Alignment:
Q  88 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 187  Q
    |||||||||||||||| |||||  ||||||||||||| |||| ||||||||||||||||||||||| || ||||||||||||| ||||| |||  |||||    
T  270 tctcatggctatgcaatcacctccctcttcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgccacggt 171  T
Q  188 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 287  Q
    ||||| |||||||||||||||||||||| ||||||||||||| | || |||||||||| | |||||||| | |||||||||||||  ||||||||||||     
T  170 tttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcc 71  T
Q  288 tcaaggccattgaagaatc 306  Q
    |||||||||| ||||||||    
T  70 tcaaggccatcgaagaatc 52  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 88 - 306
Target Start/End: Original strand, 7359 - 7577
Alignment:
Q  88 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 187  Q
    |||||||||||||||| |||||  ||||||||||||| |||| ||||||||||||||||||||||| || ||||||||||||| ||||| |||  |||||    
T  7359 tctcatggctatgcaatcacctccctcttcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgccacggt 7458  T
Q  188 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 287  Q
    ||||| |||||||||||||||||||||| ||||||||||||| | || |||||||||| | |||||||| | |||||||||||||  ||||||||||||     
T  7459 tttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcc 7558  T
Q  288 tcaaggccattgaagaatc 306  Q
    |||||||||| ||||||||    
T  7559 tcaaggccatcgaagaatc 7577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 8e-46; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 88 - 321
Target Start/End: Complemental strand, 18724425 - 18724192
Alignment:
Q  88 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 187  Q
    |||||||||||||||| |||||| ||| ||||||||| ||||||||  |||||||||||||||||| ||||| || ||||||||||||| |||  |||||    
T  18724425 tctcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggt 18724326  T
Q  188 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 287  Q
    ||||| ||  |||||||||||||||||| ||||||||||||||| || |||||||||| |  ||| ||  | ||||| |||||||  | ||||||||||     
T  18724325 tttactggtcatctctacaaggctcttactgacaagggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcg 18724226  T
Q  288 tcaaggccattgaagaatccacgatcttcattcc 321  Q
     ||| ||||||||||| || | ||||||||||||    
T  18724225 acaatgccattgaagagtctaggatcttcattcc 18724192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 90 - 321
Target Start/End: Complemental strand, 18731842 - 18731611
Alignment:
Q  90 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 189  Q
    |||||||||||||| |||||| ||| ||||||||| ||||||||  |||||||||||||||||| ||||| || ||||||||||||| |||  |||||||    
T  18731842 tcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtgacggttt 18731743  T
Q  190 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatc 289  Q
    ||| ||| |||||||||  ||||||| ||||||||||||||| || |||||||||| |  ||| ||  | ||||| |||||||  | ||||||||||  |    
T  18731742 tactggccatctctacagagctcttactgacaagggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcgac 18731643  T
Q  290 aaggccattgaagaatccacgatcttcattcc 321  Q
    || ||||||||||| || | ||||||||||||    
T  18731642 aatgccattgaagagtctaggatcttcattcc 18731611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 88 - 321
Target Start/End: Complemental strand, 18699740 - 18699507
Alignment:
Q  88 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 187  Q
    |||||||||||||||| |||||| ||| ||||||||| ||||||||  |||||||||||||||||| ||||| || ||||||| ||||| |||  |||||    
T  18699740 tctcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcactgacactcgtgacggt 18699641  T
Q  188 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 287  Q
    ||||| ||| |||||||||| ||||||| ||||||||||||||| || |||||||||| |  ||| ||  | || || |||||||  | ||||||||||     
T  18699640 tttactggccatctctacaaagctcttactgacaagggaatccacaccttcattgatgaccgtgacctgcaaagtggggatgaaatcaaaccatcactcg 18699541  T
Q  288 tcaaggccattgaagaatccacgatcttcattcc 321  Q
     ||| ||||||||||| || | ||||||||||||    
T  18699540 acaatgccattgaagagtctaggatcttcattcc 18699507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 90 - 321
Target Start/End: Complemental strand, 18679905 - 18679674
Alignment:
Q  90 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 189  Q
    |||||||||||||| |||||| ||| | ||||||| ||||||||  |||||||||||||||||| ||||| || ||||||||||||| |||  |||||||    
T  18679905 tcatggctatgcaatcaccttcctcattctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggttt 18679806  T
Q  190 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatc 289  Q
    ||| ||  |||||||||||||||||| |||||| |||||||| || |||||||||| |  ||| ||  | ||||| |||||||  | ||||||||||  |    
T  18679805 tactggtcatctctacaaggctcttactgacaaaggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcgac 18679706  T
Q  290 aaggccattgaagaatccacgatcttcattcc 321  Q
    || ||||||||||| || | ||||||||||||    
T  18679705 aatgccattgaagagtctaggatcttcattcc 18679674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 90 - 245
Target Start/End: Complemental strand, 18655815 - 18655660
Alignment:
Q  90 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 189  Q
    ||||||||| |||| |||||| ||| ||||||||| ||||||||  |||||||||||||||||| ||||| || ||||||||||||| |||  |||||||    
T  18655815 tcatggctaggcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggttt 18655716  T
Q  190 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatg 245  Q
    ||| ||  |||||||||| ||||||| ||||||||||||||| || ||||||||||    
T  18655715 tactgggcatctctacaaagctcttactgacaagggaatccacaccttcattgatg 18655660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 88 - 228
Target Start/End: Complemental strand, 17989390 - 17989250
Alignment:
Q  88 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 187  Q
    ||||||||| ||||||  |||||||| |||||||||| ||||||||||||||| |||| | ||||| |||| || || |||||  |||| ||||||||||    
T  17989390 tctcatggccatgcaattacctttctattcctcttcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggt 17989291  T
Q  188 tttacgggcaatctctacaaggctcttattgacaagggaat 228  Q
    || || ||||||||||  |||||||||||||||||||||||    
T  17989290 ttcaccggcaatctcttgaaggctcttattgacaagggaat 17989250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 18073599 - 18073739
Alignment:
Q  88 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 187  Q
    ||||||||| ||||||  |||||||| |||||||||| ||||||||||||||| |||| | ||||| |||| || || |||||  |||| ||||||||||    
T  18073599 tctcatggccatgcaattacctttctattcctcttcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggt 18073698  T
Q  188 tttacgggcaatctctacaaggctcttattgacaagggaat 228  Q
    || || ||||||||||  |||||||||||||||||||||||    
T  18073699 ttcaccggcaatctcttgaaggctcttattgacaagggaat 18073739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 17989185 - 17989142
Alignment:
Q  296 attgaagaatccacgatcttcattcccatattttctgccaacta 339  Q
    ||||||||||||| ||| || |||||||||||||||||||||||    
T  17989185 attgaagaatccaggattttgattcccatattttctgccaacta 17989142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 18073804 - 18073847
Alignment:
Q  296 attgaagaatccacgatcttcattcccatattttctgccaacta 339  Q
    ||||||||||||| ||| || |||||||||||||||||||||||    
T  18073804 attgaagaatccaggattttgattcccatattttctgccaacta 18073847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 18683007 - 18682966
Alignment:
Q  5 atattcaccaatccttatagagagacaaaatcagatgaagat 46  Q
    ||||||| ||||||||||||| ||| ||||||||||||||||    
T  18683007 atattcatcaatccttatagaaagagaaaatcagatgaagat 18682966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 18692321 - 18692281
Alignment:
Q  5 atattcaccaatccttatagagagacaaaatcagatgaaga 45  Q
    ||||||| ||||||||||||| ||| |||||||||||||||    
T  18692321 atattcatcaatccttatagaaagagaaaatcagatgaaga 18692281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 112 - 306
Target Start/End: Complemental strand, 28164678 - 28164484
Alignment:
Q  112 ctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggct 211  Q
    ||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||| |||  ||||||| || ||| ||||||| |||||     
T  28164678 ctcttcctcttcaatttcctatggattcacataccaagtgttcctcagttttaggggcagtgacactcgtgacggtttcactggccatctctataaggcc 28164579  T
Q  212 cttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatc 306  Q
    |||   ||||||||||| || |||||||||||||    ||||||| | |||||||| ||||  ||||| ||| ||||||||||||||||| ||||    
T  28164578 cttgacgacaagggaattcacacattcattgatgattgtgatcttgagagaggagaagaaatcacaccgtcattcatcaaggccattgaaaaatc 28164484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 115 - 245
Target Start/End: Complemental strand, 28127993 - 28127863
Alignment:
Q  115 ttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctctt 214  Q
    |||||||||||||||||||| |||||| ||||||||||| ||||| || ||||||||||||| |||  ||||||| || ||| ||||||||||||| |||    
T  28127993 ttcctcttcaatttcctatggattcacataccaagtgttcctcagcttcaggggcagtgacactcgtgacggtttcactggccatctctacaaggccctt 28127894  T
Q  215 attgacaagggaatccatacattcattgatg 245  Q
      ||||||||||||||| |||||||||||||    
T  28127893 tatgacaagggaatccacacattcattgatg 28127863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 303
Target Start/End: Complemental strand, 268697 - 268482
Alignment:
Q  88 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 187  Q
    |||||||||||||||| |||||| ||||||||||||||| || |||| |||  | ||||| || || ||||  || || ||| |||||| |||  | |||    
T  268697 tctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatttgcctaccaggtcttcctcaacttcagaggcggtgacactcgtgagggt 268598  T
Q  188 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 287  Q
    ||||  ||| |||||||||||||||||| ||||||||||||||| || ||||||||||    ||| ||| | ||||| |||||||  | ||||||||||     
T  268597 tttattggccatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggatgaaatcaaaccatcactcg 268498  T
Q  288 tcaaggccattgaaga 303  Q
     ||| |||||||||||    
T  268497 acaatgccattgaaga 268482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 29274125 - 29273966
Alignment:
Q  86 aatctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacg 185  Q
    |||||||||||||||||| |||||| ||||||||||||||| || |||| |||||||||||| || || ||||  ||||| ||| |||||| |||  |||    
T  29274125 aatctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggattcacttaccaggtcttcctcaactttagaggcggtgacactcgtgacg 29274026  T
Q  186 gttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatg 245  Q
    ||||||  ||| ||||||||||| |||||| ||||||||||||||| || ||||||||||    
T  29274025 gttttattggccatctctacaagactcttactgacaagggaatccacaccttcattgatg 29273966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 59407 - 59547
Alignment:
Q  88 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 187  Q
    ||||||||| ||||||  |||||||| |||||||||| ||||||||||||||| |||| | ||||| |||| || || |||||  |||| ||||||||||    
T  59407 tctcatggccatgcaattacctttctattcctcttcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggt 59506  T
Q  188 tttacgggcaatctctacaaggctcttattgacaagggaat 228  Q
    || || ||||||||||  |||||||||||||||||||||||    
T  59507 ttcaccggcaatctcttgaaggctcttattgacaagggaat 59547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 59612 - 59655
Alignment:
Q  296 attgaagaatccacgatcttcattcccatattttctgccaacta 339  Q
    ||||||||||||| ||| || |||||||||||||||||||||||    
T  59612 attgaagaatccaggattttgattcccatattttctgccaacta 59655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 321
Target Start/End: Original strand, 34599 - 34792
Alignment:
Q  128 tcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaa 227  Q
    ||||||| |||||| ||  | ||||| || |||||||| || ||||||| ||| || |||||||| |  |||||||| |  ||||||  | |||||||||    
T  34599 tcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaa 34698  T
Q  228 tccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcc 321  Q
    |||| || |||||||||| |   || ||| |  ||||||||||||  |||||||||||  |||||||||||||||| || | ||| ||||||||    
T  34699 tccacaccttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcc 34792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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