View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3545_low_36 (Length: 332)

Name: NF3545_low_36
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3545_low_36
NF3545_low_36
[»] chr4 (18 HSPs)
chr4 (1-314)||(2391066-2391379)
chr4 (1-314)||(2381438-2381751)
chr4 (5-314)||(2380183-2380483)
chr4 (76-299)||(2382562-2382786)
chr4 (62-125)||(2621399-2621462)
chr4 (62-183)||(2525504-2525625)
chr4 (62-102)||(12124594-12124634)
chr4 (62-124)||(2534062-2534124)
chr4 (62-107)||(2361217-2361262)
chr4 (62-191)||(2467294-2467423)
chr4 (70-107)||(2486064-2486101)
chr4 (155-187)||(2376407-2376439)
chr4 (62-101)||(2367923-2367962)
chr4 (61-102)||(2373488-2373529)
chr4 (70-115)||(2547301-2547346)
chr4 (70-125)||(2393829-2393885)
chr4 (148-192)||(2477421-2477465)
chr4 (70-102)||(12126658-12126690)
[»] chr5 (1 HSPs)
chr5 (57-114)||(41900496-41900553)


Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 2391379 - 2391066
Alignment:
Q  1 agtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagagaggtcaaatttttcatctttttggaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       |||| |||||||||||||||||||||||||||||||||||||||    
T  2391379 agtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccaaaaaaattcggaacaagtaagagaggtcaaatttttcatctttttggaca 2391280  T
Q  101 aagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtctaaagggaaagtggagatttgggtaagaagcgtgttggg 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2391279 aagctcggaacccatctttagggattttgtagaagttggaaagaatgagcgatctgaggactaaagggaaagtggagatttgggtaagaagcgtgttggg 2391180  T
Q  201 gtgattgtgttgagagaagtaattgaggttggtggatgtgagattgagggatgtgacattagagaaccgttggaagatttgaggaatgaaagggatggtt 300  Q
    | |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2391179 gcgattgcattgagagaagtaattgaggttggtggatgtgagattgagggatgtgacattagagaaccgttggaagatttgaggaatgaaagggatggtt 2391080  T
Q  301 tgttgggtgatttt 314  Q
    ||||||||||||||    
T  2391079 tgttgggtgatttt 2391066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 2381751 - 2381438
Alignment:
Q  1 agtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagagaggtcaaatttttcatctttttggaca 100  Q
    ||||||||||||||||| |||||||| |||| |||||||||||||||||       |||  |||||||||||||||||||||||||||||||||||||||    
T  2381751 agtaaagggaagcaatcgacaatgaataagaaatccttcttgttgatccaagtaatttcagaacaagtaagagaggtcaaatttttcatctttttggaca 2381652  T
Q  101 aagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtctaaagggaaagtggagatttgggtaagaagcgtgttggg 200  Q
    |||||||||||||||||||||| |||||  | || ||||| | |||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||    
T  2381651 aagctcggaacccatctttagggattttaaaaaacttggagaaaatgagcgatttgaggtctaaagggaaagcggagatttgggtaagaagcatgttggg 2381552  T
Q  201 gtgattgtgttgagagaagtaattgaggttggtggatgtgagattgagggatgtgacattagagaaccgttggaagatttgaggaatgaaagggatggtt 300  Q
    |||||||||| |||| |||||| |||||||| |||||| ||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||    
T  2381551 gtgattgtgtagagaaaagtaagtgaggttgctggatgcgagattgagggatgtgacactagagaagcgttggaagagttgaggaatgaaagggatggtt 2381452  T
Q  301 tgttgggtgatttt 314  Q
    ||| ||||||||||    
T  2381451 tgtagggtgatttt 2381438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 5 - 314
Target Start/End: Complemental strand, 2380483 - 2380183
Alignment:
Q  5 aagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagagaggtcaaatttttcatctttttggacaaagc 104  Q
    |||||||||||||| |||||||| | ||||||||||| |||||||       || ||||||  | | ||| ||||||||||||||||||||||||||||     
T  2380483 aagggaagcaatcagcaatgaagtaaatatccttcttattgatccaagtaattttgaaacacatgaaagaagtcaaatttttcatctttttggacaaagg 2380384  T
Q  105 tcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtctaaagggaaagtggagatttgggtaagaagcgtgttggggtga 204  Q
    ||| || |||| ||| || |||||| ||| |||||| |||||||||||| |||| |||||||| |||| ||||||||| ||||||||||||||| |||||    
T  2380383 tcgcaatccatttttcgggattttgaagaggttggagagaatgagcgatttgagatctaaaggtaaagcggagatttgtgtaagaagcgtgttgaggtga 2380284  T
Q  205 ttgtgttgagagaagtaattgaggttggtggatgtgagattgagggatgtgacattagagaaccgttggaagatttgaggaatgaaagggatggtttgtt 304  Q
    |||| |||||          ||||||| ||||||||||||||||||||||||  |||    ||| ||| ||||   ||||||| ||||||||||||||||    
T  2380283 ttgtattgag---------ggaggttgatggatgtgagattgagggatgtgatgttacgacacctttgcaagaggcgaggaataaaagggatggtttgtt 2380193  T
Q  305 gggtgatttt 314  Q
    ||||||||||    
T  2380192 gggtgatttt 2380183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 76 - 299
Target Start/End: Complemental strand, 2382786 - 2382562
Alignment:
Q  76 gtcaaatttttcatctttttggacaaagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtctaaagggaaagtgg 175  Q
    ||||| |||||||||||||||||||||||||| || |||| | || | |||||| ||| |||||| |||||||| ||| |||| ||||||||  ||   |    
T  2382786 gtcaattttttcatctttttggacaaagctcgcaatccatttatatggattttgaagaggttggagagaatgagtgatttgagatctaaaggtgaaacag 2382687  T
Q  176 agatttggg-taagaagcgtgttggggtgattgtgttgagagaagtaattgaggttggtggatgtgagattgagggatgtgacattagagaaccgttgga 274  Q
    |||||| |  |||||||||||||| ||| ||||| ||||||||||| | ||||||||  |||||||| |||||||||||||||||||| || || | |||    
T  2382686 agattttgcataagaagcgtgttgaggtaattgtattgagagaagtgagtgaggttgagggatgtgatattgagggatgtgacattagggagccttcgga 2382587  T
Q  275 agatttgaggaatgaaagggatggt 299  Q
    |||   |||||||||||||||||||    
T  2382586 agaggcgaggaatgaaagggatggt 2382562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 2621462 - 2621399
Alignment:
Q  62 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttaggaat 125  Q
    ||||||| ||||| |||||||||||||| |||||||| |||||||| ||||||||| |||||||    
T  2621462 aacaagtgagagatgtcaaatttttcatatttttggagaaagctcgcaacccatctgtaggaat 2621399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 2525504 - 2525625
Alignment:
Q  62 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtc 161  Q
    ||||||| ||||| |||||||||||||| || ||||||||| | || ||| ||| || |||||  |||  |  || | | ||| |||||||| |||||||    
T  2525504 aacaagtgagagatgtcaaatttttcattttcttggacaaaacacgcaactcattttgaggaaccttgggggggtggtagagagtgagcgatttgaggtc 2525603  T
Q  162 taaagggaaagtggagatttgg 183  Q
    ||||||||||||||||||||||    
T  2525604 taaagggaaagtggagatttgg 2525625  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 12124594 - 12124634
Alignment:
Q  62 aacaagtaagagaggtcaaatttttcatctttttggacaaa 102  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  12124594 aacaagtgagagaggtcaaatttttcatctttttggacaaa 12124634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 2534062 - 2534124
Alignment:
Q  62 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttaggaa 124  Q
    ||||||| ||||| || |||||||||||||| |||||||||||||||||| ||| || |||||    
T  2534062 aacaagtgagagatgttaaatttttcatcttcttggacaaagctcggaactcattttcaggaa 2534124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 2361262 - 2361217
Alignment:
Q  62 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcg 107  Q
    ||||||| ||||| |||||||||||||| |||||||||||||||||    
T  2361262 aacaagtgagagatgtcaaatttttcatttttttggacaaagctcg 2361217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 191
Target Start/End: Original strand, 2467294 - 2467423
Alignment:
Q  62 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtc 161  Q
    ||||||| || || |||||||||||||||| |||||| |||||||| |||||||||  |||||   |   |  || | | ||| |||| ||| |||||||    
T  2467294 aacaagtgagtgatgtcaaatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtc 2467393  T
Q  162 taaagggaaagtggagatttgggtaagaag 191  Q
     ||||||||||||||||||| |||||||||    
T  2467394 caaagggaaagtggagattttggtaagaag 2467423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 2486064 - 2486101
Alignment:
Q  70 agagaggtcaaatttttcatctttttggacaaagctcg 107  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  2486064 agagatgtcaaatttttcatctttttggacaaagctcg 2486101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 2376439 - 2376407
Alignment:
Q  155 tgaggtctaaagggaaagtggagatttgggtaa 187  Q
    |||||||||||||||||||||||||||||||||    
T  2376439 tgaggtctaaagggaaagtggagatttgggtaa 2376407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 101
Target Start/End: Complemental strand, 2367962 - 2367923
Alignment:
Q  62 aacaagtaagagaggtcaaatttttcatctttttggacaa 101  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  2367962 aacaagtaagagaggtcaagtttttcatccttttggacaa 2367923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 2373529 - 2373488
Alignment:
Q  61 aaacaagtaagagaggtcaaatttttcatctttttggacaaa 102  Q
    |||||||| ||||||||||||| ||||||||||| |||||||    
T  2373529 aaacaagtgagagaggtcaaatatttcatcttttcggacaaa 2373488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 2547301 - 2547346
Alignment:
Q  70 agagaggtcaaatttttcatctttttggacaaagctcggaacccat 115  Q
    ||||| |||||||||||||||||||  ||||||||||| |||||||    
T  2547301 agagacgtcaaatttttcatcttttcagacaaagctcgcaacccat 2547346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 2393885 - 2393829
Alignment:
Q  70 agagaggtcaaattttt-catctttttggacaaagctcggaacccatctttaggaat 125  Q
    ||||| ||||||||||| |||||||| |||||||||||| ||||||| |||| ||||    
T  2393885 agagatgtcaaattttttcatcttttgggacaaagctcgcaacccatttttatgaat 2393829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 2477421 - 2477465
Alignment:
Q  148 agcgatctgaggtctaaagggaaagtggagatttgggtaagaagc 192  Q
    |||||||||||||||| ||  |||||||| |||||||||||||||    
T  2477421 agcgatctgaggtctatagctaaagtggatatttgggtaagaagc 2477465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 12126658 - 12126690
Alignment:
Q  70 agagaggtcaaatttttcatctttttggacaaa 102  Q
    |||||||||||||||||||||| ||||||||||    
T  12126658 agagaggtcaaatttttcatctgtttggacaaa 12126690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 41900553 - 41900496
Alignment:
Q  57 ttcgaaacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaaccca 114  Q
    |||| ||||||| |||||||||||| || | ||||||||||| |||||||| ||||||    
T  41900553 ttcgtaacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 41900496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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