View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_low_40 (Length: 326)
Name: NF3545_low_40
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 52630608 - 52630907
Alignment:
| Q |
11 |
cacagacaaatacaagtaatcagtccaagacataggtgctaacccatactccaatgttgacttcagaacatgtatccataattcaccaccccaaacatcc |
110 |
Q |
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| T |
52630608 |
cacagacaaatacaagtaatcagtccaagacataggtgctaacccatactccaatgttgccttcagaacatgtatccataattcaccaccccaaacatcc |
52630707 |
T |
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| Q |
111 |
acatacatttctttctcccaaattagaggacccttaattcctacacctccttttcccatttcaatcaccactcctttcatccctgtatctgcttgtccgt |
210 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
52630708 |
acatacatttctttctcccaaactagaggacccttaattcctacacctccttttcccatttcaatcaccactcctttcatccttgtatccgcttgtccgt |
52630807 |
T |
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| Q |
211 |
ttattgagtgtccgtgtcctctcgctgacaccgcaa---acttctgccatttatacgccgctttaactacccttgccacgtcattggccgacgctggtcg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52630808 |
ttattgagtgtccgtgtcctctcgctgacaccgcaaagtactgctgccatttatacgccgctttaactacccttgccacgtcattggccgacgctggtcg |
52630907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 17243465 - 17243437
Alignment:
| Q |
12 |
acagacaaatacaagtaatcagtccaaga |
40 |
Q |
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| T |
17243465 |
acagacaaatacaagtaatcagtccaaga |
17243437 |
T |
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