View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_low_41 (Length: 312)
Name: NF3545_low_41
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 30098309 - 30098593
Alignment:
| Q |
18 |
atataatccatatgaacaaatcattctttcctcaagtcttcacaactcatcatgattggttcaaatccaccattcattccttaaaatcaaaaacattagt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30098309 |
atataatccatatgaacaaatcattctttcctcaagtcttcacaactcatcatgattggttcaaatccaccattcattccttaaaatcaaaaacattagt |
30098408 |
T |
|
| Q |
118 |
acctgatgattatgaccaagcatcaaagcaatcacagaagaaactggtgtacacctatgatcatgccatgtatggctttagtgcagtgttatcttcaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30098409 |
acctgatgattatgaccaagcatcaaagcaatcacagaagaaactggtgtacacctatgatcatgccatgtatggctttagtgcagtgttatcttcaaat |
30098508 |
T |
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| Q |
218 |
gagttagagattcttaagaacattgatggctttgttgcagcatatcaagatagaacagctaccattgacacaactcatacctttg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30098509 |
gagttagagattcttaagaacattgatggctttgtttcagcatatcaagatagaactgctaccattgacacaactcatacctttg |
30098593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 30088605 - 30088315
Alignment:
| Q |
18 |
atataatccatatgaacaaatcattctttcctcaagtcttcacaactcatcatgattggttcaaatccaccattcattccttaaaatcaaaaacattagt |
117 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30088605 |
atataatccatatgaacaaatccttctttcctcaagtcttcacaaatcatcatgattggttcaaatccaccattcattccttaaaatcaaaaacactagt |
30088506 |
T |
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| Q |
118 |
acctgatgattatgaccaa------gcatcaaagcaatcacagaagaaactggtgtacacctatgatcatgccatgtatggctttagtgcagtgttatct |
211 |
Q |
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| T |
30088505 |
acttgatgatcatgatcaacaagaagcatcaaagcaatcacagaagaaactagtgtacacctatgataatgccatgtatggattttgtgcaatgttatct |
30088406 |
T |
|
| Q |
212 |
tcaaatgagttagagattcttaagaacattgatggctttgttgcagcatatcaagatagaacagctaccattgacacaactcatacctttg |
302 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
30088405 |
tcaaatgagttagagattattaagaacattgatggctttgtttcagcatatcaagatagaacagcaaccattgacacaactcacacctttg |
30088315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 30092566 - 30092273
Alignment:
| Q |
18 |
atataatccatatgaacaaatcattctttcctcaagtcttcacaactcatcatgattggttcaaatccaccattcattccttaaaatcaaaaacattagt |
117 |
Q |
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|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30092566 |
atataatccatatgaacaaatccttctttcctcaagtcttcacaaatcatcatgattggttcaaatctaccattcattccttaaaatcaaaaacattagt |
30092467 |
T |
|
| Q |
118 |
acctgatgattatgaccaa---------gcatcaaagcaatcacagaagaaactggtgtacacctatgatcatgccatgtatggctttagtgcagtgtta |
208 |
Q |
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| T |
30092466 |
gcttgatgatcatgatcaacaagaagaagcatcaatgcaatcacagaagcaactagtatacacctatgataatgccatgtatggatttagtgcattgtta |
30092367 |
T |
|
| Q |
209 |
tcttcaaatgagttagagattcttaagaacattgatggctttgttgcagcatatcaagatagaacagctaccattgacacaactcatacctttg |
302 |
Q |
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||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||| |
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| T |
30092366 |
tcttcaaatgagttagagactcttaacaacactgatggctttgttgcagcatatcaagacagaacagcaaccatggacacaactcacacctttg |
30092273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 35172049 - 35171979
Alignment:
| Q |
155 |
aagaaactggtgtacacctatgatcatgccatgtatggctttagtgcagtgttatcttcaaatgagttaga |
225 |
Q |
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|||||| ||||||||||||| ||||||||||| |||| || |||||||| ||||| |||| |||||||| |
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| T |
35172049 |
aagaaattggtgtacacctacaatcatgccatgcatggattcagtgcagtcttatcaccaaaagagttaga |
35171979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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