View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3545_low_43 (Length: 299)

Name: NF3545_low_43
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3545_low_43
NF3545_low_43
[»] chr3 (1 HSPs)
chr3 (96-285)||(25729903-25730092)
[»] chr8 (4 HSPs)
chr8 (101-282)||(1800393-1800574)
chr8 (96-285)||(1782608-1782797)
chr8 (102-275)||(1776188-1776361)
chr8 (119-224)||(1771591-1771696)
[»] chr1 (3 HSPs)
chr1 (101-192)||(19790008-19790098)
chr1 (134-176)||(41324592-41324634)
chr1 (134-176)||(47249688-47249730)
[»] chr5 (3 HSPs)
chr5 (96-192)||(1672788-1672884)
chr5 (117-190)||(21124749-21124822)
chr5 (113-177)||(4081431-4081495)
[»] chr2 (1 HSPs)
chr2 (113-176)||(4845155-4845218)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 96 - 285
Target Start/End: Complemental strand, 25730092 - 25729903
Alignment:
Q  96 caatatttagaatgtgagaggtgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctcaacatatggaccagtatt 195  Q
    |||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25730092 caatctttagaatgtgagaggtgagtttttttggtttggagaacatgaccatatgatctgaaccatttatcactttcacctcaacatatggaccagtatt 25729993  T
Q  196 cccaatcatccacatttgataatcctctggaaacaaaatgtcttctttgctgatgatgaagactttaggtacccttccatgcctatgctt 285  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  25729992 cccaatcacccacatttgataatcctctggaaacaaaatgtcttctttgctgatgatgtagactttaggcacccttccatacctatgctt 25729903  T

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Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 101 - 282
Target Start/End: Original strand, 1800393 - 1800574
Alignment:
Q  101 tttagaatgtgagaggtgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctcaacatatggaccagtattcccaa 200  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||| |||    
T  1800393 tttagaatgtgagaggtgagcttttctggtttagaaaacatgaccatgtgatctgaatcctttatcactttcacctcaacatatggacgagtattctcaa 1800492  T
Q  201 tcatccacatttgataatcctctggaaacaaaatgtcttctttgctgatgatgaagactttaggtacccttccatgcctatg 282  Q
    ||||||| |||||| |||||||||  |||||| | ||||||||||||||||||||| ||||||| |||||||||| ||||||    
T  1800493 tcatccatatttgaaaatcctctgtcaacaaattatcttctttgctgatgatgaaggctttaggcacccttccattcctatg 1800574  T

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Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 96 - 285
Target Start/End: Original strand, 1782608 - 1782797
Alignment:
Q  96 caatatttagaatgtgagaggtgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctcaacatatggaccagtatt 195  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||  |    
T  1782608 caatctttagaatgtgagaggtgagttttttaggtttagagaacatgaccatgtgatctgaatcctttatcactttcacttcaacatatggaccagttct 1782707  T
Q  196 cccaatcatccacatttgataatcctctggaaacaaaatgtcttctttgctgatgatgaagactttaggtacccttccatgcctatgctt 285  Q
    | |||| ||||| | |||   |||||||   |  | | ||||| |||||||||| ||||||||||| ||||||||||||| ||| |||||    
T  1782708 ctcaattatccataattgcatatcctctttgatgatattgtctcctttgctgataatgaagacttttggtacccttccattcctctgctt 1782797  T

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Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 102 - 275
Target Start/End: Original strand, 1776188 - 1776361
Alignment:
Q  102 ttagaatgtgagaggtgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctcaacatatggaccagtattcccaat 201  Q
    ||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||| | |||||||||||||| |||||||||||||||||  || ||||    
T  1776188 ttagaatatgagaggtgagctttttaggtttggagaacataaccatgtgatctgaatcctttatcactttcacttcaacatatggaccagttctctcaat 1776287  T
Q  202 catccacatttgataatcctctggaaacaaaatgtcttctttgctgatgatgaagactttaggtacccttccat 275  Q
     ||||| | |||   |||||||  ||  ||||||||| ||||   ||| ||||||||||| |||||||||||||    
T  1776288 tatccataattgcagatcctctctaatgaaaatgtctcctttagagataatgaagacttttggtacccttccat 1776361  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 1771591 - 1771696
Alignment:
Q  119 agcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctcaacatatggaccagtattcccaatcatccacatttgataat 218  Q
    ||||| ||||||||||| ||||||||||||||||| ||| | | |||||||| |||||   || |||||||| |  ||  |||||||||||||||| |||    
T  1771591 agcttctttggtttagacaacatgaccatgtgatcagaatcctctatcacttccaccttctcaaatggaccacttctcttaatcatccacatttgaaaat 1771690  T
Q  219 cctctg 224  Q
    ||||||    
T  1771691 cctctg 1771696  T

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Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 19790098 - 19790008
Alignment:
Q  101 tttagaatgtgagaggtgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctcaacatatggaccagt 192  Q
    ||||| ||||||||| | || ||||||||||| |||||||||||||| ||||||||| | |||||||| |||||||||||||||||||||||    
T  19790098 tttagtatgtgagagttaag-ttttttggtttggagaacatgaccatttgatctgaatcctttatcacattcacctcaacatatggaccagt 19790008  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 41324592 - 41324634
Alignment:
Q  134 gagaacatgaccatgtgatctgaaccatttatcactttcacct 176  Q
    |||||||||||||||||||||||| | |||||||| |||||||    
T  41324592 gagaacatgaccatgtgatctgaatcctttatcacattcacct 41324634  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 47249730 - 47249688
Alignment:
Q  134 gagaacatgaccatgtgatctgaaccatttatcactttcacct 176  Q
    |||||||||||||||||||||||| | |||||||| |||||||    
T  47249730 gagaacatgaccatgtgatctgaatcctttatcacattcacct 47249688  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 1672788 - 1672884
Alignment:
Q  96 caatatttagaatgtgagaggtgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctcaacatatggaccagt 192  Q
    |||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||| |  ||||||| |||| ||||| | ||||| ||||    
T  1672788 caatctttagtatgtgagaggtgagcttttttggtttggagaacatgaccatttgatccgaatccattatcacattcagctcaatacatggatcagt 1672884  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 21124822 - 21124749
Alignment:
Q  117 tgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctcaacatatggacca 190  Q
    |||||||||||||||| |||||||||||||| | ||||||| | |||||||| |||||||||| | ||||||||    
T  21124822 tgagcttttttggtttggagaacatgaccattttatctgaatcctttatcacattcacctcaatacatggacca 21124749  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 4081495 - 4081431
Alignment:
Q  113 gaggtgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctc 177  Q
    ||||||||||||||| |||||||||||||| |||||||||||||| |  ||||||| ||||||||    
T  4081495 gaggtgagcttttttagtttagagaacatggccatgtgatctgaatccattatcacattcacctc 4081431  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 4845155 - 4845218
Alignment:
Q  113 gaggtgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacct 176  Q
    |||||||||||||||| ||||| ||||||||| |||||||||||| |  ||||||| |||||||    
T  4845155 gaggtgagcttttttgctttagtgaacatgactatgtgatctgaatccattatcacattcacct 4845218  T

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