View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_low_46 (Length: 292)
Name: NF3545_low_46
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 21056949 - 21056685
Alignment:
| Q |
11 |
gaaaagaagtgaagcagtagctatattcatctctatagataataacaagatgtttctcccatttacaataattacaaacaggttcaaataatttaaatag |
110 |
Q |
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| T |
21056949 |
gaaaagaagtgaagcagtagctatattcatctctatagataataacaagatgtttctcccatttaaaataattacaaacaggttcaaataatttaaatag |
21056850 |
T |
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| Q |
111 |
tcaattaaaggaagcttgagttctagaaatcaattaaagctatgtttggactctggacaacgaaactggagatcaccttttagtaatnnnnnnngaaatg |
210 |
Q |
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| T |
21056849 |
tcaattaaaggaagcttgagttctagaaatcaattaaagctatgtctggactctggacaacgaaactggagatcaccttttagtaataaaaaaagaaacg |
21056750 |
T |
|
| Q |
211 |
atgtcgagtaaatcaaaatacaggtgcaagagaagcatttttctcaagcgatttaatgtaaatta |
275 |
Q |
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| T |
21056749 |
atgtcgagtaaatcaaaatacaggtgcaagagaagcatttttctcaagcgatttaatgtaaatta |
21056685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 11 - 275
Target Start/End: Original strand, 26365064 - 26365323
Alignment:
| Q |
11 |
gaaaagaagtgaagcagtagcta-tattcatctctatagataataacaagatgtttctcccatttacaataattacaaacaggttcaaataatttaaata |
109 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||| |||||||| ||||||||||||||| |||||||| |
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| T |
26365064 |
gaaaagaagtgaagcagtagctaatattcatctctatagataataaaaagatgtttctcccttttaaaataattataaacaggttcaaatagtttaaata |
26365163 |
T |
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| Q |
110 |
gtcaattaaaggaagcttgagttctaga-aatcaattaaagctatgtttggactctggacaacgaaactggagatcaccttttagtaatnnnnnnngaaa |
208 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| | |||| || ||||| || ||||||||| ||||| |||| |
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| T |
26365164 |
gtcaattaaaggaagcttgagttctagataatcaattaaagctatgtctcgact-------ac-aaactttaggtcaccttttcgtaataaaaaaagaaa |
26365255 |
T |
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| Q |
209 |
tgatgtcgagtaaatcaaaatacag--gtgcaagagaagcatttttctcaagcgatttaatgtaaatta |
275 |
Q |
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||| ||| ||||||||||||||||| |||||| |||||||| |||||||| ||||| ||||| ||||| |
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| T |
26365256 |
tgacgtcaagtaaatcaaaatacaggtgtgcaa-agaagcatgtttctcaaacgattcaatgtgaatta |
26365323 |
T |
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