View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_low_49 (Length: 270)
Name: NF3545_low_49
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 40668464 - 40668218
Alignment:
| Q |
13 |
aaaatcatgagtgagaagtatattgcttggtctcatatccctatgaataataggaccacctcgacattcctcatgtagaaaacgcaatccctttgcaatc |
112 |
Q |
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| T |
40668464 |
aaaatcatgagtgagaagtatattgcttggtctcatatccctatgaataataggaccacctcgacattcctcatgtagaaaacgcaatccctttgcaatc |
40668365 |
T |
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| Q |
113 |
ccaagtgcaataccatatctttgagaccaatcaagaactgcttcactattttctacaacaaaataaaaaccttagagtgcctttaaagtatac-ttgtta |
211 |
Q |
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| T |
40668364 |
ccaagtgcaataccatatctttgagaccaatcaagaactgcttcactattttctacaacaaaataaaaatcttagagtgcctttaaagtatactttgtta |
40668265 |
T |
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| Q |
212 |
gacttgaagataagataaaacaacataaggcacttaccaaataaatg |
258 |
Q |
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| T |
40668264 |
gacttgaagataagataaaacaacataaggcacttaccaaataaatg |
40668218 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 4301874 - 4301817
Alignment:
| Q |
108 |
caatcccaagtgcaataccatatctttgagaccaatcaagaactgcttcactattttc |
165 |
Q |
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| T |
4301874 |
caatcccaagtgcaataccatatcttcgaggccaatcaataactacttcactattttc |
4301817 |
T |
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