View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3545_low_55 (Length: 253)

Name: NF3545_low_55
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3545_low_55
NF3545_low_55
[»] chr6 (4 HSPs)
chr6 (9-198)||(26464191-26464387)
chr6 (178-253)||(26464156-26464231)
chr6 (31-95)||(13379112-13379176)
chr6 (97-127)||(680749-680779)
[»] chr1 (2 HSPs)
chr1 (19-196)||(31197929-31198103)
chr1 (178-253)||(31197892-31197967)
[»] scaffold0182 (1 HSPs)
scaffold0182 (27-95)||(32489-32557)
[»] chr7 (1 HSPs)
chr7 (27-95)||(21723853-21723921)
[»] chr5 (1 HSPs)
chr5 (27-78)||(26616528-26616582)
[»] chr8 (3 HSPs)
chr8 (97-127)||(20385946-20385976)
chr8 (97-127)||(30711233-30711263)
chr8 (97-127)||(30719010-30719040)
[»] chr2 (1 HSPs)
chr2 (97-127)||(44044468-44044498)


Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 9 - 198
Target Start/End: Complemental strand, 26464387 - 26464191
Alignment:
Q  9 agcagcacagacgaacaacaatggaaggaggttctttctctgctgcatatcgtccacttcaacaaccattttcatcttcaattttctagatttttgttcc 108  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26464387 agcaacacacacgaacaacaatggaaggaggttctttctctgctgcatatcgtccacttcaacaaccattttcatcttcaattttctagatttttgttcc 26464288  T
Q  109 tgcattcataaacaaaccacctgattt-------tnnnnnnnnnctccacaatcaccattcatcttctcaaatccgcattcattttctcaaatccac 198  Q
    |||||||||||||||||||||||||||                 | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26464287 tgcattcataaacaaaccacctgatttaaaaaaaaaaaaaaaaaccccacaatcaccattcatcttctcaaatccgcattcattttctcaaatccac 26464191  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 26464231 - 26464156
Alignment:
Q  178 cattcattttctcaaatccacattcatattctcaaatccactttttcgtcttctccttcaaatcgttcttccgcta 253  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26464231 cattcatcttctcaaatccgcattcattttctcaaatccactttttcgtcttctccttcaaattgttcttccgcta 26464156  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 13379112 - 13379176
Alignment:
Q  31 ggaaggaggttctttctctgctgcatatcgtccacttcaacaaccattttcatcttcaattttct 95  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  13379112 ggaaggaggttctttctctactgcatatcgtcaacttcaacaaccattttcatcttcaattttct 13379176  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Complemental strand, 680779 - 680749
Alignment:
Q  97 gatttttgttcctgcattcataaacaaacca 127  Q
    |||||||||||||||||||||||||||||||    
T  680779 gatttttgttcctgcattcataaacaaacca 680749  T

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Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 31198103 - 31197929
Alignment:
Q  19 acgaacaacaatggaaggaggttctttctctgctgcatatcgtccacttcaacaaccattttcatcttcaattttctagatttttgttcctgcattcata 118  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31198103 acgaacaacaattgaaggaggttcttcctctgctgcatatcgtccacttcaacaaccattttcatcttcaattttctagatttttgttcctgcattcata 31198004  T
Q  119 aacaaaccacctgattttnnnnnnnnnctccacaatcaccattcatcttctcaaatccgcattcattttctcaaatcc 196  Q
    ||||||||||||||||           ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31198003 aacaaaccacctgatt---aaaaaaaactccacaatcaccattcatcttctcaaatccgcattcatcttctcaaatcc 31197929  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 31197967 - 31197892
Alignment:
Q  178 cattcattttctcaaatccacattcatattctcaaatccactttttcgtcttctccttcaaatcgttcttccgcta 253  Q
    ||||||| ||||||||||| ||||||| ||||||||||| |||||| ||||||||||||||| |||||||||||||    
T  31197967 cattcatcttctcaaatccgcattcatcttctcaaatccgcttttttgtcttctccttcaaaccgttcttccgcta 31197892  T

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Target: scaffold0182 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 32557 - 32489
Alignment:
Q  27 caatggaaggaggttctttctctgctgcatatcgtccacttcaacaaccattttcatcttcaattttct 95  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32557 caatggaaggaggttctttctctgctgcatatcgtcaacttcaacaaccattttcatcttcaattttct 32489  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 21723921 - 21723853
Alignment:
Q  27 caatggaaggaggttctttctctgctgcatatcgtccacttcaacaaccattttcatcttcaattttct 95  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21723921 caatggaaggaggttctttctctgctgcatatcgtcaacttcaacaaccattttcatcttcaattttct 21723853  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 26616528 - 26616582
Alignment:
Q  27 caatggaaggaggttctttctctgctgca---tatcgtccacttcaacaaccatt 78  Q
    |||||||||||| ||||||||||||||||   |||||||||||||||||||||||    
T  26616528 caatggaaggagcttctttctctgctgcagcatatcgtccacttcaacaaccatt 26616582  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Original strand, 20385946 - 20385976
Alignment:
Q  97 gatttttgttcctgcattcataaacaaacca 127  Q
    |||||||||||||||||||||||||||||||    
T  20385946 gatttttgttcctgcattcataaacaaacca 20385976  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Original strand, 30711233 - 30711263
Alignment:
Q  97 gatttttgttcctgcattcataaacaaacca 127  Q
    |||||||||||||||||||||||||||||||    
T  30711233 gatttttgttcctgcattcataaacaaacca 30711263  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Original strand, 30719010 - 30719040
Alignment:
Q  97 gatttttgttcctgcattcataaacaaacca 127  Q
    |||||||||||||||||||||||||||||||    
T  30719010 gatttttgttcctgcattcataaacaaacca 30719040  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Original strand, 44044468 - 44044498
Alignment:
Q  97 gatttttgttcctgcattcataaacaaacca 127  Q
    |||||||||||||||||||||||||||||||    
T  44044468 gatttttgttcctgcattcataaacaaacca 44044498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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