View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_low_57 (Length: 252)
Name: NF3545_low_57
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_57 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 816 - 629
Alignment:
| Q |
11 |
cagagactcgatatttcaaacttgatattttaaattttttaaatcataatatacattaaaa-aatgtatcgctcaatctaactgataacaatatgtatga |
109 |
Q |
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| T |
816 |
cagagactccatttttcaaacttgatattttaaattttttaaatcataatatacattaaaataatgtatcgctcaatctaaccgataacaatatgtatga |
717 |
T |
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| Q |
110 |
tttaatgaccacaacaaatctaaaccaaaacaacacaacgtttg---acttttacatacccattcgaacttaagtataaacaaaatat |
194 |
Q |
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| T |
716 |
tttgataatcacaacaaatctaaaccagaacaacacaacgtttgaatacttttacatacctattcgaacttaagtataaacaaaatat |
629 |
T |
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