View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3545_low_6 (Length: 607)

Name: NF3545_low_6
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3545_low_6
NF3545_low_6
[»] chr7 (6 HSPs)
chr7 (14-589)||(508141-508716)
chr7 (180-259)||(41508108-41508188)
chr7 (87-129)||(20032518-20032560)
chr7 (88-129)||(20043634-20043675)
chr7 (218-259)||(46341505-46341546)
chr7 (93-129)||(41508231-41508267)
[»] chr2 (6 HSPs)
chr2 (83-129)||(21229614-21229660)
chr2 (83-129)||(38496604-38496650)
chr2 (85-129)||(2761644-2761688)
chr2 (82-129)||(3268929-3268976)
chr2 (82-129)||(3269488-3269535)
chr2 (82-129)||(3270047-3270094)
[»] chr6 (6 HSPs)
chr6 (83-129)||(12143690-12143736)
chr6 (180-266)||(180341-180428)
chr6 (93-129)||(34837131-34837167)
chr6 (83-129)||(24789905-24789951)
chr6 (93-129)||(180471-180507)
chr6 (93-129)||(2950135-2950171)
[»] chr8 (5 HSPs)
chr8 (213-266)||(30112519-30112572)
chr8 (93-129)||(2520114-2520150)
chr8 (95-129)||(16890251-16890285)
chr8 (93-129)||(2207901-2207937)
chr8 (218-266)||(8251237-8251285)
[»] chr5 (4 HSPs)
chr5 (82-123)||(36477866-36477907)
chr5 (93-129)||(18705130-18705166)
chr5 (84-129)||(11691031-11691076)
chr5 (86-126)||(73647-73687)
[»] chr4 (5 HSPs)
chr4 (93-129)||(31707333-31707369)
chr4 (83-126)||(47231544-47231587)
chr4 (220-266)||(16572253-16572299)
chr4 (83-129)||(30615247-30615293)
chr4 (218-266)||(33721714-33721762)
[»] chr3 (6 HSPs)
chr3 (93-129)||(28695677-28695713)
chr3 (218-266)||(32211888-32211936)
chr3 (83-129)||(40344903-40344949)
chr3 (84-129)||(17003549-17003594)
chr3 (218-266)||(8825457-8825504)
chr3 (94-126)||(36659318-36659350)
[»] chr1 (5 HSPs)
chr1 (83-129)||(25130244-25130290)
chr1 (83-129)||(28165096-28165142)
chr1 (83-129)||(31003556-31003601)
chr1 (83-129)||(31152564-31152610)
chr1 (97-129)||(9851798-9851830)


Alignment Details
Target: chr7 (Bit Score: 460; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 14 - 589
Target Start/End: Complemental strand, 508716 - 508141
Alignment:
Q  14 cagagatagtagatgattgacagttactccccggaccctaattataagaagnnnnnnnnnnnnnnnnntcaatgcaatgattaattattgtaactttttg 113  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||    
T  508716 cagagatagtagatgattgatagttactccccggaccctaattataagaagaaaaataaaaataaaaatcaatgcaatgattaattattgtaactttttg 508617  T
Q  114 aatatttttacaaatagtatagtacttttatagaagatcatgaaacattataaatacaccatttgttattaaaaagacaaatattaattaagagatacga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  508616 aatatttttacaaatagtatagtacttttatagaagatcatgaaacattataaatacaccatttgttattaaaaagacaaatattaaataagagatacga 508517  T
Q  214 aattttttaagcaataacttcaccttaaaaattgtgaaattttcttctaaatatgactannnnnnncttcaaaattttcttataataaagtcagcacggg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  508516 aattttttaagcaataacttcaccttaaaaattgtgaaattttcttctaaatatgactatttttttcttcaaaattttcttataataaagtcagcacggg 508417  T
Q  314 agcagttaaatataagtcaatatcattctcttaactcatctcatatatagtccctttcttgtatctcattcgttagagatggttttgagctatatatgtt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  508416 agcagttaaatataagtcaatatcattctcttaactcatctcatatatagtccctttcttgtatctcattcgttagagatggttttgagctatatatgtt 508317  T
Q  414 attttttatctggaatcattgatttgcataatgannnnnnnnctcattttatccaagtggtttctaactaggtatgattttttaagttcatcatctaagt 513  Q
    ||||||||| ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  508316 attttttatatggaatcattgatttgcataatgattttttttctcattttatccaagtggtttctaactaggtatgattttttaagttcatcatctaagt 508217  T
Q  514 gagacattattttgttcgtcaccgtagtactacattgattgttcttttattatcaggatctcttccatgagaacca 589  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  508216 gagacattattttgttcgtcaccatagtactacattgattgtttttttattatcaggatctcttccatgagaacca 508141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 41508188 - 41508108
Alignment:
Q  180 tattaaaaagacaaatattaattaagagatacgaaatt-ttttaagcaataacttcaccttaaaaattgtgaaattttctt 259  Q
    ||||||||||||||| ||||| |||| | ||  ||| | ||||||||||||||| ||||||||||||||||| ||||||||    
T  41508188 tattaaaaagacaaacattaaataaggggtaaaaaagtcttttaagcaataactacaccttaaaaattgtgatattttctt 41508108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 20032518 - 20032560
Alignment:
Q  87 gcaatgattaattattgtaactttttgaatatttttacaaata 129  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||    
T  20032518 gcaatcattaattgttgtaactttttaaatatttttacaaata 20032560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 20043634 - 20043675
Alignment:
Q  88 caatgattaattattgtaactttttgaatatttttacaaata 129  Q
    |||| ||||||| |||||||||||| ||||||||||||||||    
T  20043634 caatcattaattgttgtaactttttaaatatttttacaaata 20043675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 46341546 - 46341505
Alignment:
Q  218 ttttaagcaataacttcaccttaaaaattgtgaaattttctt 259  Q
    ||||||||||||||| |||||||||| |||||| ||||||||    
T  46341546 ttttaagcaataactacaccttaaaagttgtgatattttctt 46341505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 41508267 - 41508231
Alignment:
Q  93 attaattattgtaactttttgaatatttttacaaata 129  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  41508267 attaattagtgtaactttttgaatgtttttacaaata 41508231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 21229660 - 21229614
Alignment:
Q  83 caatgcaatgattaattattgtaactttttgaatatttttacaaata 129  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  21229660 caatgcaatcattaattattgtaactttttgaatatttttacaaata 21229614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 38496650 - 38496604
Alignment:
Q  83 caatgcaatgattaattattgtaactttttgaatatttttacaaata 129  Q
    |||||| || |||||||| ||||||||||||||||||||||||||||    
T  38496650 caatgctatcattaattagtgtaactttttgaatatttttacaaata 38496604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 2761688 - 2761644
Alignment:
Q  85 atgcaatgattaattattgtaactttttgaatatttttacaaata 129  Q
    ||||||| |||||||| |||||||||||||||||||||| |||||    
T  2761688 atgcaatcattaattagtgtaactttttgaatatttttataaata 2761644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 3268976 - 3268929
Alignment:
Q  82 tcaatgcaatgattaattattgtaactttttgaatatttttacaaata 129  Q
    |||||||||  |||||||| | ||||||||||||||||||||||||||    
T  3268976 tcaatgcaactattaattagtataactttttgaatatttttacaaata 3268929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 3269535 - 3269488
Alignment:
Q  82 tcaatgcaatgattaattattgtaactttttgaatatttttacaaata 129  Q
    |||||||||  |||||||| | ||||||||||||||||||||||||||    
T  3269535 tcaatgcaactattaattagtataactttttgaatatttttacaaata 3269488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 3270094 - 3270047
Alignment:
Q  82 tcaatgcaatgattaattattgtaactttttgaatatttttacaaata 129  Q
    |||||||||  |||||||| | ||||||||||||||||||||||||||    
T  3270094 tcaatgcaactattaattagtataactttttgaatatttttacaaata 3270047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 12143690 - 12143736
Alignment:
Q  83 caatgcaatgattaattattgtaactttttgaatatttttacaaata 129  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||    
T  12143690 caatgcaatcattaattaatgtaactttttgaatatttttacaaata 12143736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 180 - 266
Target Start/End: Complemental strand, 180428 - 180341
Alignment:
Q  180 tattaaaaagacaaatattaattaagagatacgaaatt-ttttaagcaataacttcaccttaaaaattgtgaaattttcttctaaata 266  Q
    ||||||||||||||| ||||| |||| | ||  ||| | ||||||||||||||| || |||||||||||||| |||||||| ||||||    
T  180428 tattaaaaagacaaacattaaataaggggtataaaagtcttttaagcaataactacatcttaaaaattgtgatattttcttataaata 180341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 34837131 - 34837167
Alignment:
Q  93 attaattattgtaactttttgaatatttttacaaata 129  Q
    |||||||| ||||||||||||||||||||||||||||    
T  34837131 attaattagtgtaactttttgaatatttttacaaata 34837167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 24789905 - 24789951
Alignment:
Q  83 caatgcaatgattaattattgtaactttttgaatatttttacaaata 129  Q
    ||||||||| ||||||| |||||| ||||| ||||||||||||||||    
T  24789905 caatgcaatcattaattgttgtaattttttaaatatttttacaaata 24789951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 180507 - 180471
Alignment:
Q  93 attaattattgtaactttttgaatatttttacaaata 129  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  180507 attaattagtgtaactttttgaatatgtttacaaata 180471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 2950135 - 2950171
Alignment:
Q  93 attaattattgtaactttttgaatatttttacaaata 129  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  2950135 attaattaatgtaattttttgaatatttttacaaata 2950171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 30112519 - 30112572
Alignment:
Q  213 aaattttttaagcaataacttcaccttaaaaattgtgaaattttcttctaaata 266  Q
    |||| ||||||||||||||| |||||||||| |||||| |||||||| ||||||    
T  30112519 aaatcttttaagcaataactacaccttaaaatttgtgacattttcttataaata 30112572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 2520114 - 2520150
Alignment:
Q  93 attaattattgtaactttttgaatatttttacaaata 129  Q
    |||||||| ||||||||||||||||||||||||||||    
T  2520114 attaattaatgtaactttttgaatatttttacaaata 2520150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 129
Target Start/End: Original strand, 16890251 - 16890285
Alignment:
Q  95 taattattgtaactttttgaatatttttacaaata 129  Q
    |||||| ||||||||||||||||||||||||||||    
T  16890251 taattaatgtaactttttgaatatttttacaaata 16890285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 2207937 - 2207901
Alignment:
Q  93 attaattattgtaactttttgaatatttttacaaata 129  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  2207937 attatttagtgtaactttttgaatatttttacaaata 2207901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 8251285 - 8251237
Alignment:
Q  218 ttttaagcaataacttcaccttaaaaattgtgaaattttcttctaaata 266  Q
    ||||||||||||| | |||||||||| |||||| |||||||| ||||||    
T  8251285 ttttaagcaataattacaccttaaaagttgtgatattttcttataaata 8251237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 36477866 - 36477907
Alignment:
Q  82 tcaatgcaatgattaattattgtaactttttgaatattttta 123  Q
    |||||||||| |||||||| ||||||||||||||||||||||    
T  36477866 tcaatgcaatcattaattaatgtaactttttgaatattttta 36477907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 18705166 - 18705130
Alignment:
Q  93 attaattattgtaactttttgaatatttttacaaata 129  Q
    |||||||| ||||||||||||||||||||||||||||    
T  18705166 attaattagtgtaactttttgaatatttttacaaata 18705130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 11691031 - 11691076
Alignment:
Q  84 aatgcaatgattaattattgtaactttttgaatatttttacaaata 129  Q
    |||||||| |||||||  | ||||||||||||||||||||||||||    
T  11691031 aatgcaattattaattgatttaactttttgaatatttttacaaata 11691076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 73687 - 73647
Alignment:
Q  86 tgcaatgattaattattgtaactttttgaatatttttacaa 126  Q
    |||||| |||||||| ||||||||||| |||||||||||||    
T  73687 tgcaatcattaattagtgtaacttttttaatatttttacaa 73647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 31707333 - 31707369
Alignment:
Q  93 attaattattgtaactttttgaatatttttacaaata 129  Q
    |||||||| ||||||||||||||||||||||||||||    
T  31707333 attaattagtgtaactttttgaatatttttacaaata 31707369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 47231544 - 47231587
Alignment:
Q  83 caatgcaatgattaattattgtaactttttgaatatttttacaa 126  Q
    ||||| ||| |||||||| |||||||||||||||||||||||||    
T  47231544 caatggaatcattaattaatgtaactttttgaatatttttacaa 47231587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 16572299 - 16572253
Alignment:
Q  220 ttaagcaataacttcaccttaaaaattgtgaaattttcttctaaata 266  Q
    ||||||||||||| |||||||||| |||||| |||||||| ||||||    
T  16572299 ttaagcaataactacaccttaaaagttgtgacattttcttataaata 16572253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 30615293 - 30615247
Alignment:
Q  83 caatgcaatgattaattattgtaactttttgaatatttttacaaata 129  Q
    ||||||||| ||| ||| |||||||||||| ||||||||||||||||    
T  30615293 caatgcaattattcattgttgtaactttttaaatatttttacaaata 30615247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 33721714 - 33721762
Alignment:
Q  218 ttttaagcaataacttcaccttaaaaattgtgaaattttcttctaaata 266  Q
    |||||| |||||||| ||| ||||||||||||| |||||||| ||||||    
T  33721714 ttttaaacaataactacacattaaaaattgtgacattttcttataaata 33721762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 28695713 - 28695677
Alignment:
Q  93 attaattattgtaactttttgaatatttttacaaata 129  Q
    |||||||| ||||||||||||||||||||||||||||    
T  28695713 attaattagtgtaactttttgaatatttttacaaata 28695677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 32211888 - 32211936
Alignment:
Q  218 ttttaagcaataacttcaccttaaaaattgtgaaattttcttctaaata 266  Q
    |||||| |||||||| |||||||||| ||||||||||||||| ||||||    
T  32211888 ttttaaacaataactacaccttaaaagttgtgaaattttcttataaata 32211936  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 40344903 - 40344949
Alignment:
Q  83 caatgcaatgattaattattgtaactttttgaatatttttacaaata 129  Q
    ||||||| | ||| ||||||| |||||||||||||||||||||||||    
T  40344903 caatgcagtcattgattattgcaactttttgaatatttttacaaata 40344949  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 17003549 - 17003594
Alignment:
Q  84 aatgcaatgattaattattgtaactttttgaatatttttacaaata 129  Q
    |||||| | ||| |||| ||||||||||||||||||||||||||||    
T  17003549 aatgcattcattgattaatgtaactttttgaatatttttacaaata 17003594  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 8825457 - 8825504
Alignment:
Q  218 ttttaagcaataacttcaccttaaaaattgtgaaattttcttctaaata 266  Q
    ||||||||||||||| |||||| |||||||||| |||||||| ||||||    
T  8825457 ttttaagcaataactacacctt-aaaattgtgacattttcttataaata 8825504  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 36659350 - 36659318
Alignment:
Q  94 ttaattattgtaactttttgaatatttttacaa 126  Q
    ||||||| |||||||||||||||||||||||||    
T  36659350 ttaattaatgtaactttttgaatatttttacaa 36659318  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 25130290 - 25130244
Alignment:
Q  83 caatgcaatgattaattattgtaactttttgaatatttttacaaata 129  Q
    ||||||| | |||||||||||||| |||||||||| |||||||||||    
T  25130290 caatgcagttattaattattgtaaatttttgaatacttttacaaata 25130244  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 28165096 - 28165142
Alignment:
Q  83 caatgcaatgattaattattgtaactttttgaatatttttacaaata 129  Q
    |||| |||| || ||||||||||| ||||||||||||||||||||||    
T  28165096 caatacaatcatcaattattgtaattttttgaatatttttacaaata 28165142  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 31003556 - 31003601
Alignment:
Q  83 caatgcaatgattaattattgtaactttttgaatatttttacaaata 129  Q
    ||||||||| |||||| || |||||||||||||||||||||||||||    
T  31003556 caatgcaatcattaatcat-gtaactttttgaatatttttacaaata 31003601  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 31152610 - 31152564
Alignment:
Q  83 caatgcaatgattaattattgtaactttttgaatatttttacaaata 129  Q
    ||||||||| | |||||  ||||||||||||||||||||||||||||    
T  31152610 caatgcaattaataattcatgtaactttttgaatatttttacaaata 31152564  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 9851798 - 9851830
Alignment:
Q  97 attattgtaactttttgaatatttttacaaata 129  Q
    |||| ||||||||||||||||||||||||||||    
T  9851798 attaatgtaactttttgaatatttttacaaata 9851830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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