View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_low_65 (Length: 242)
Name: NF3545_low_65
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_65 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 6003316 - 6003551
Alignment:
| Q |
7 |
ggacatcatcatcaattggatatttctgcataaggaaatgtttgtacataagtttaatcatgtggatgtttagtgatttcaaatcaaagcaaaaataggc |
106 |
Q |
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| T |
6003316 |
ggacatcatcatcaattggatatttctgcataaggaaatgtttgtacataagtttaatcatgtggatgtttagtgatttcaaatcaaagcaaaaataggc |
6003415 |
T |
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| Q |
107 |
taatttatatagggaaaatttctttggaagttatgaatttacctttacatttgtcaagtccacattgtgttccatcaagaagccaatgaattccatgaaa |
206 |
Q |
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| T |
6003416 |
taatttatatagggaaaatttatttggaagttatgaatttacctttacatttgtcaagtccacattgtgttccatcaagaagccaatgaattccatgaaa |
6003515 |
T |
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| Q |
207 |
ttcttctttgtaggtcggtaatgtccactatagggc |
242 |
Q |
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| T |
6003516 |
ttcttctttgtaggtcggtaatgtccactatagggc |
6003551 |
T |
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