View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3545_low_66 (Length: 242)
Name: NF3545_low_66
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_66 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 232
Target Start/End: Complemental strand, 15076896 - 15076666
Alignment:
| Q |
2 |
cccattacaaaaactttcaaaagtttcctccaagcttaataccggtaaagatggatgttttgaccttattttattaatgaaaatccaatatgacacaaaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15076896 |
cccattacaaaaactttcaaaagtttcctctaagcttaaaactggtaaagatggatgttttgaccttattttattaatgaaaatccaatatgacacaaaa |
15076797 |
T |
|
| Q |
102 |
ttatcaaatggatttctacttatataaactatcttacaattagactcttgaattgacttggcaagtgaagaaaatggaatgtgagtcccaaatatccttg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||| | ||||| |
|
|
| T |
15076796 |
gtatcaaatggatttctacttatataaactatcttacaattggagtcttgaattgacttggcaagtgaaggaaatggaatgtgagtcccaaaaagccttg |
15076697 |
T |
|
| Q |
202 |
gttcaattatttttgatataggaatttggtc |
232 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| |
|
|
| T |
15076696 |
gttcaattatttttgatagaggaattcggtc |
15076666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 15171613 - 15171847
Alignment:
| Q |
1 |
ccccattacaaaaactttcaaaagtttcctccaagcttaataccggtaaagatggatgttttgaccttattttattaatgaaaatccaatatgacacaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| || | |||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
15171613 |
ccccattacaaaaactttcaaaagtttcctctaagcttaaaactgataaagatggatgttttgaccttattttattaacgaaactccaatatgacacaaa |
15171712 |
T |
|
| Q |
101 |
attatcaaatggatttctacttatataa---actatcttacaattagactcttgaattgacttggcaagtgaagaaaatggaatgtgagtcccaaatatc |
197 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | | |
|
|
| T |
15171713 |
agtatcaaatggatttctacttatataaactactatcttacaattggactcttgaattgacttggcaagtgaaggaaatggaatgtgagtcccaaaaagc |
15171812 |
T |
|
| Q |
198 |
cttggttcaattatttttgatataggaatttggtc |
232 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||| |
|
|
| T |
15171813 |
cttggttcaattatttttgatagaggaattcggtc |
15171847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 91 - 238
Target Start/End: Original strand, 15168868 - 15169015
Alignment:
| Q |
91 |
atgacacaaaattatcaaatggatttctacttatataaactatcttacaattagactcttgaattgacttggcaagtgaagaaaatggaatgtgagtccc |
190 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15168868 |
atgacacaaaagtatcaaatggatttctacttatataaactatcttacaattagactcttgaatcgacttggcaagtgaagaaaatggaatgtgagtccc |
15168967 |
T |
|
| Q |
191 |
aaatatccttggttcaattatttttgatataggaatttggtccttcat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15168968 |
aaatatccttggttcaattatttttgatataggaatttggtccttcat |
15169015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 15165246 - 15165346
Alignment:
| Q |
1 |
ccccattacaaaaactttcaaaagtttcctccaagcttaataccggtaaagatggatgttttgaccttattttattaatgaaaatccaatatgacacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
15165246 |
ccccattacaaaaactttcaaaagtttcctttaagcttacaatttgtaaagatggatgttttgaccttattttattaacgaaactccaatatgacacaaa |
15165345 |
T |
|
| Q |
101 |
a |
101 |
Q |
| |
|
| |
|
|
| T |
15165346 |
a |
15165346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 15214555 - 15214705
Alignment:
| Q |
69 |
attttattaatgaaaatccaatatgacacaaaattatcaaatggatttctacttatataaactatcttacaattagactcttgaattgacttggcaagtg |
168 |
Q |
| |
|
||||| || ||||||||||||||||| ||||| |||||||||| ||||||| |||||||| ||| |||||||| ||||||| || |||||||| | | |
|
|
| T |
15214555 |
attttgttgatgaaaatccaatatgatacaaatgtatcaaatgggtttctacatatataaattattttacaattggactctttaactgacttgggcaacg |
15214654 |
T |
|
| Q |
169 |
aagaaaatggaatgtgagtcccaaatatccttggttcaattatttttgata |
219 |
Q |
| |
|
||| |||||| |||||||| ||||| | |||||||||| | || ||||||| |
|
|
| T |
15214655 |
aaggaaatggcatgtgagttccaaaaagccttggttcagtcatatttgata |
15214705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 207
Target Start/End: Complemental strand, 15066876 - 15066747
Alignment:
| Q |
78 |
atgaaaatccaatatgacacaaaattatcaaatggatttctacttatataaactatcttacaattagactcttgaattgacttggcaagtgaagaaaatg |
177 |
Q |
| |
|
|||||| |||||||||| ||||| |||||||||| ||||||| |||||||| ||| |||||||| ||||||||||||||||||| | |||| ||||| |
|
|
| T |
15066876 |
atgaaagtccaatatgatacaaatgtatcaaatgggtttctacatatataaattattttacaattggactcttgaattgacttgggcaacgaaggaaatg |
15066777 |
T |
|
| Q |
178 |
gaatgtgagtcccaaatatccttggttcaa |
207 |
Q |
| |
|
| |||||||| ||| | | ||||||||||| |
|
|
| T |
15066776 |
gcatgtgagttccataaagccttggttcaa |
15066747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 60 - 219
Target Start/End: Original strand, 4506560 - 4506718
Alignment:
| Q |
60 |
tttgaccttattttattaatgaaaatccaatatgacacaaaattatcaaatggatttctacttatataaactatcttacaattagactcttgaattgact |
159 |
Q |
| |
|
|||||||||||||||||| ||| |||| ||||||||| | ||||| |||||||||| |||||||| ||| |||||||| ||||||| |||||||| |
|
|
| T |
4506560 |
tttgaccttattttattagcataaaaccaagcagacacaaaagtgtcaaaaggatttctacatatataaattattttacaattggactctttaattgact |
4506659 |
T |
|
| Q |
160 |
tggcaagtgaagaaaatggaatgtgagtcccaaatatccttggttcaattatttttgata |
219 |
Q |
| |
|
|||| |||||| | ||||||| ||||| ||||| | |||||||||| | || ||||||| |
|
|
| T |
4506660 |
tggctagtgaaaagaatggaacatgagt-ccaaaaagccttggttcattcatgtttgata |
4506718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 1618179 - 1618318
Alignment:
| Q |
69 |
attttattaatgaaaatccaatatgacacaaaattatcaaatggatttctacttatataaactatcttacaattagactcttgaattgacttggcaagtg |
168 |
Q |
| |
|
||||| || |||||| ||||||| ||||||||| | |||||||| ||||||| ||| |||| |||||||||||| || |||| |||||||||||| || | |
|
|
| T |
1618179 |
attttgttcatgaaattccaataagacacaaaagtgtcaaatgggtttctacatatgtaaattatcttacaattggattctttaattgacttggctagag |
1618278 |
T |
|
| Q |
169 |
aagaaaatggaatgtgagtcccaaatatccttggttcaat |
208 |
Q |
| |
|
||| ||| ||||| ||||| ||||| | |||||||||||| |
|
|
| T |
1618279 |
aagtaaaaggaatatgagttccaaaaagccttggttcaat |
1618318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 1626744 - 1626883
Alignment:
| Q |
69 |
attttattaatgaaaatccaatatgacacaaaattatcaaatggatttctacttatataaactatcttacaattagactcttgaattgacttggcaagtg |
168 |
Q |
| |
|
||||| || |||||| ||||||| ||||||||| | |||||||| || |||| ||| |||| |||||||||||| ||||||| ||| |||||||| || | |
|
|
| T |
1626744 |
attttgttcatgaaattccaataagacacaaaagtgtcaaatgggttcctacatatgtaaattatcttacaattggactctttaatagacttggctagag |
1626843 |
T |
|
| Q |
169 |
aagaaaatggaatgtgagtcccaaatatccttggttcaat |
208 |
Q |
| |
|
|| || ||||||||||| ||||| |||||||||||||| |
|
|
| T |
1626844 |
aatggaaaggaatgtgagttccaaaaatccttggttcaat |
1626883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University