View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3545_low_67 (Length: 241)
Name: NF3545_low_67
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_67 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 36440341 - 36440118
Alignment:
| Q |
18 |
agttatagcagtggcacttaatgttgtaggcgaccggtcatcattcttcaattgtacattttgtgacactatatgtagagagtggtcgtcaattatacca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36440341 |
agttatagcagtggcacttaatgttgtaggcgaccggtcatcattcttcaattgtacattttgtgacactatatgtagagagtggtcgtcaattatacca |
36440242 |
T |
|
| Q |
118 |
caattgtgcgatttttggaacgatcaacttcatcttcaacctactttgattcaatgcgaggatgtcgagtcaaggactaaagaactttgtgatagcagat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36440241 |
caattgtgcgatttttggaacgatcaacttcatcttcaacctactttgattcaatgcgaggatgtcgagtcaaggactaaagaactttgtgatagcagat |
36440142 |
T |
|
| Q |
218 |
cattgcaaaacttgaatggttctt |
241 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36440141 |
cattgcaaaacttgaatggttctt |
36440118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University