View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3545_low_7 (Length: 606)

Name: NF3545_low_7
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3545_low_7
NF3545_low_7
[»] chr7 (1 HSPs)
chr7 (31-591)||(5379117-5379678)
[»] chr6 (6 HSPs)
chr6 (58-591)||(19001792-19002326)
chr6 (58-198)||(22680277-22680422)
chr6 (59-170)||(22325101-22325213)
chr6 (72-188)||(23159612-23159731)
chr6 (72-210)||(20023104-20023244)
chr6 (520-591)||(22680433-22680505)
[»] chr3 (1 HSPs)
chr3 (76-591)||(23220180-23220695)
[»] chr8 (2 HSPs)
chr8 (58-198)||(22644277-22644422)
chr8 (520-591)||(22644194-22644266)
[»] chr5 (2 HSPs)
chr5 (58-198)||(27032001-27032146)
chr5 (520-591)||(27032157-27032229)


Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 31 - 591
Target Start/End: Original strand, 5379117 - 5379678
Alignment:
Q  31 gttgttggaataattcttccnnnnnnngttatgctgatgtatctcatagtttggtcctcattctcttcatttgtttcaaga-acggcatgtggtggagga 129  Q
    ||||||||||||||||||||       ||||||||||||||||||||||||||||| |||||||||||||||||| ||||  ||||||||||||||||||    
T  5379117 gttgttggaataattcttcctttttttgttatgctgatgtatctcatagtttggtcttcattctcttcatttgttccaaggcacggcatgtggtggagga 5379216  T
Q  130 gtcacataggccatgaaggtatccttcaattatattattcactttttctattttaccaacccattatatcataaatgtttctctttatgttattattttt 229  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5379217 gtcacataggccatgaaggtatctttcaattatattattcactttttctattttaccaacccattatatcataaatgtttctctttatgttattattttt 5379316  T
Q  230 attctcattgtttgcttatgtatatcatgcatgctttaaatattttatttcttttataaaatggtcgtcaattagggaagggaggggtacgttattcgtg 329  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5379317 attttcattgtttgcttatgtatatcatgcatgctttaaatattttatttcttttataaaatggtcgtcaatcagggaagggaggggtacgttattcgtg 5379416  T
Q  330 gttgacgtatacctcactatcaaagatgaatggaggataatatagggagcctgtaaatgacattttaatgcaaaggacgtagtattcagtggttggggta 429  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  5379417 gttgacgtatacctcactatcaaagatgaatggaggatgatatagggagcctgtaaatgacattttaatgcaaaggacatagcattcagtggttggggta 5379516  T
Q  430 gaacagtggacgccataatggaagtggacgattggtcgcgttttgggacttttgcgttggcgaatggtcacaacaataatgcttggtgaacgaggcattt 529  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  5379517 gaacagtggacgccataatggaaatggacgattggtcgcgttttgggacttttgcgttggctaatggtcacaacaataatgcttggtaaacgaggcattt 5379616  T
Q  530 ataattaggttttcattatttttctctcatggcctttttatttggtcaattccaaagcattt 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5379617 ataattaggttttcattatttttctctcatggcctttttatttggtcaattccaaagcattt 5379678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 58 - 591
Target Start/End: Original strand, 19001792 - 19002326
Alignment:
Q  58 gttatgctgatgtatctcatagtttggtcctcattctcttcatttgtttcaagaacgg-catgtggtggaggagtcacataggccatgaaggtatccttc 156  Q
    |||||| |||||||||||||||||| ||||||||||||||||| |||| |||| || | |||||||||||||||||||||||||||||||||||||||||    
T  19001792 gttatgttgatgtatctcatagtttcgtcctcattctcttcatctgttccaaggaccgacatgtggtggaggagtcacataggccatgaaggtatccttc 19001891  T
Q  157 aattatattattcactttttctattttaccaacccattatatcataaatgtttctctttatgttattatttttattctcattgtttgcttatgtatatca 256  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19001892 aattttattatacactttttctattttaccaacccattatatcataaatgtttctctttatgttattatttttattttcattgtttgcttatgtatatca 19001991  T
Q  257 tgcatgctttaaatattttatttcttttataaaatggtcgtcaattagggaagggaggggtacgttattcgtggttgacgtatacctcactatcaaagat 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||| ||||||||||||||||||||||||||||    
T  19001992 tgcatgctttaaatattttatttcttttataaaatggtcgtcaatcagggaagggaggcgtacattattcgcggttgacgtatacctcactatcaaagat 19002091  T
Q  357 gaatggaggataatatagggagcctgtaaatgacattttaatgcaaaggacgtagtattcagtggttggggtagaacagtggacgccataatggaagtgg 456  Q
    |||  |||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||    
T  19002092 gaacagaggatgatatagggagcctgtaaatgacattttaatgcaaaggacatagcattcagtggttggggtagaacagtggacgccacaatggaagtgg 19002191  T
Q  457 acgattggtcgcgttttgggacttttgcgttggcgaatggtcacaacaataatgcttggtgaacgaggcatttataattaggttttcattatttttctct 556  Q
    ||||| |||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19002192 acgatcggtcgcattttgcgacttttgcgttggctaatggtcacaacaataatgcttggtgaacgaggcatttataattaggttttcattatttatctct 19002291  T
Q  557 catggcctttttatttggtcaattccaaagcattt 591  Q
    | ||| |||||||||||||||||||||||||||||    
T  19002292 cttggtctttttatttggtcaattccaaagcattt 19002326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 58 - 198
Target Start/End: Original strand, 22680277 - 22680422
Alignment:
Q  58 gttatgctgatgtatctcatagtttggtcctcattctcttcatttgtttcaagaac-ggcatgtggtggaggagtcacataggccatgaaggtatccttc 156  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| || |||| || |||||||||||||||||||||||||||||||||||||||||||    
T  22680277 gttatgctggtgtatctcatagtttggtcctcattctcttcattttttccaaggaccggcatgtggtggaggagtcacataggccatgaaggtatccttc 22680376  T
Q  157 aattatat--ta-ttcac-tttttctattttaccaacccattatat 198  Q
    ||||||||  || ||||| |||||||||||||||||||||||||||    
T  22680377 aattatatagtagttcacttttttctattttaccaacccattatat 22680422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 59 - 170
Target Start/End: Original strand, 22325101 - 22325213
Alignment:
Q  59 ttatgctgatgtatctcatagtttggtcctcattctcttcatttgtttcaagaac-ggcatgtggtggaggagtcacataggccatgaaggtatccttca 157  Q
    |||||||| ||||||||||||||||||||||||||||||||||| || |||| || ||||||||||||||||||||||||||||||||||||||| ||||    
T  22325101 ttatgctggtgtatctcatagtttggtcctcattctcttcattttttccaaggactggcatgtggtggaggagtcacataggccatgaaggtatcattca 22325200  T
Q  158 attatattattca 170  Q
    ||||||| |||||    
T  22325201 attatataattca 22325213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 23159612 - 23159731
Alignment:
Q  72 tctcatagtttggtcctcattctcttcatttgtttcaa--gaacggcatgtggtggaggagtcacataggccatgaaggtatccttcaattatattattc 169  Q
    ||||||||||||||||||||| ||||||||| |||| |  || ||||||||| ||||| || | ||||||| |||||||||| ||||||||||||||| |    
T  23159612 tctcatagtttggtcctcattttcttcatttttttccaaggaccggcatgtgatggagtagccgcataggcaatgaaggtattcttcaattatattatac 23159711  T
Q  170 a-ctttttctattttaccaa 188  Q
    |  |||||||||||||||||    
T  23159712 agttttttctattttaccaa 23159731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 72 - 210
Target Start/End: Original strand, 20023104 - 20023244
Alignment:
Q  72 tctcatagtttggtcctcattctcttcatttgttt-caagaacgg-catgtggtggaggagtcacataggccatgaaggtatccttcaattatattattc 169  Q
    |||||| |||||||||||||| ||||||||| ||| |||| || | |||||| ||||| || | |||||   |||||||||| ||||||||||||||| |    
T  20023104 tctcattgtttggtcctcattttcttcattttttttcaaggaccgacatgtgatggagtagccgcatagaaaatgaaggtattcttcaattatattatac 20023203  T
Q  170 actttttctattttaccaacccattatatcataaatgtttc 210  Q
    | ||||||||||||||||| | |||||||||| | ||||||    
T  20023204 aatttttctattttaccaatctattatatcattattgtttc 20023244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 520 - 591
Target Start/End: Original strand, 22680433 - 22680505
Alignment:
Q  520 cgaggcatttataattaggttttcattatttt-tctctcatggcctttttatttggtcaattccaaagcattt 591  Q
    ||||||||||| ||||||||||||||| |||| | |||| ||| ||||||| ||| |||||||||||| ||||    
T  22680433 cgaggcatttacaattaggttttcattcttttctttctcttggtctttttagttgttcaattccaaagaattt 22680505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 76 - 591
Target Start/End: Original strand, 23220180 - 23220695
Alignment:
Q  76 atagtttggtcctcattctcttcatttgtttcaagaac-ggcatgtggtggaggagtcacataggccatgaaggtatccttcaattatattattcacttt 174  Q
    ||||||||||||||||||||||||||| || |||| || ||||||| ||||||||||||||||||||||  ||||||||||| ||||||| |||||||||    
T  23220180 atagtttggtcctcattctcttcattttttccaaggaccggcatgtagtggaggagtcacataggccatacaggtatccttcgattatataattcacttt 23220279  T
Q  175 tt-ctattttaccaacccattatatcataaatgtttctctttatgttatt-atttttattctcattgtttgcttatgtatatcatgcatgctttaaatat 272  Q
    || ||||| ||||||||||||||||||||||| | | | | | | | ||| ||||||| | |||||||||| |||||||||||||||    |||||||||    
T  23220280 tttctattataccaacccattatatcataaatatatgtttctttctaatttatttttactttcattgtttgtttatgtatatcatgc----tttaaatat 23220375  T
Q  273 tttatttcttttataaaatggtcgtcaattagggaaggga-ggggtacgttattcgtggttgacgtatacctcactatcaaagatgaatggaggataata 371  Q
    |||||||||| | ||||||||| |||||| |||||||||| ||||||| ||||||| |||||||| ||| || |||||||| |||||| ||||||| |||    
T  23220376 tttatttcttctgtaaaatggtggtcaatcagggaagggaaggggtacattattcgcggttgacgaatatctaactatcaatgatgaacggaggatgata 23220475  T
Q  372 tagggagcctgtaaatgacattttaatgcaaaggacgtagtattcagtggttggggtagaacagtggacgccataatggaagtggacgattggtcgcgtt 471  Q
    |||||||||| |||||||||||||||||| ||  || ||| ||||||||| ||||||||||||    || ||| ||||||||||||| |||||  || ||    
T  23220476 tagggagcctataaatgacattttaatgctaaaaacatagcattcagtggctggggtagaacatcaaaccccacaatggaagtggacaattggatgcatt 23220575  T
Q  472 ttgggacttttgcgttggcgaatggtcacaacaataatgcttggtgaacgaggcatttataattaggttttcattatttttctctcatggcctttttatt 571  Q
    ||| ||||| | |||||||  ||| |||| |||| |||||||||||||||||||||||| ||||||||||||||  ||||| |||| ||| ||||||| |    
T  23220576 ttgtgacttctacgttggctcatgatcacgacaagaatgcttggtgaacgaggcatttacaattaggttttcatcctttttttctcttggtctttttagt 23220675  T
Q  572 tggtcaattccaaagcattt 591  Q
    || |||||||||||| ||||    
T  23220676 tgttcaattccaaagaattt 23220695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 58 - 198
Target Start/End: Complemental strand, 22644422 - 22644277
Alignment:
Q  58 gttatgctgatgtatctcatagtttggtcctcattctcttcatttgtttcaagaac-ggcatgtggtggaggagtcacataggccatgaaggtatccttc 156  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| || |||| || |||||||||||||||||||||||||||||||||||||||||||    
T  22644422 gttatgctggtgtatctcatagtttggtcctcattctcttcattttttccaaggaccggcatgtggtggaggagtcacataggccatgaaggtatccttc 22644323  T
Q  157 aattatat--ta-ttcac-tttttctattttaccaacccattatat 198  Q
    ||||||||  || ||||| |||||||||||||||||||||||||||    
T  22644322 aattatatagtagttcacttttttctattttaccaacccattatat 22644277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 520 - 591
Target Start/End: Complemental strand, 22644266 - 22644194
Alignment:
Q  520 cgaggcatttataattaggttttcattatttt-tctctcatggcctttttatttggtcaattccaaagcattt 591  Q
    ||||||||||| ||||||||||||||| |||| | |||| ||| ||||||| ||| |||||||||||| ||||    
T  22644266 cgaggcatttacaattaggttttcattcttttctttctcttggtctttttagttgttcaattccaaagtattt 22644194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 58 - 198
Target Start/End: Original strand, 27032001 - 27032146
Alignment:
Q  58 gttatgctgatgtatctcatagtttggtcctcattctcttcatttgtttcaagaac-ggcatgtggtggaggagtcacataggccatgaaggtatccttc 156  Q
    ||||||| | |||||||||||| |||||||||||||||||||||| || |||| || |||||||||||||||||||||||||||||||||||||||||||    
T  27032001 gttatgccggtgtatctcatagattggtcctcattctcttcattttttccaaggaccggcatgtggtggaggagtcacataggccatgaaggtatccttc 27032100  T
Q  157 aattatat--ta-ttcac-tttttctattttaccaacccattatat 198  Q
    ||||||||  || ||||| |||||||||||||||||||||||||||    
T  27032101 aattatatagtagttcacttttttctattttaccaacccattatat 27032146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 520 - 591
Target Start/End: Original strand, 27032157 - 27032229
Alignment:
Q  520 cgaggcatttataattaggttttcattatttt-tctctcatggcctttttatttggtcaattccaaagcattt 591  Q
    ||||||||||| ||||||||||||||| |||| | |||| ||| ||||||| ||| ||||||| |||||||||    
T  27032157 cgaggcatttacaattaggttttcattcttttctttctcttggtctttttagttgttcaattctaaagcattt 27032229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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