View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_low_76 (Length: 237)
Name: NF3545_low_76
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_76 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2629614 - 2629841
Alignment:
| Q |
1 |
aactcccttaaataaattctaacaaatatctaacaatatctaaacattacctagtgacaagtcagttttctttatttt------gtactcaaaaatattt |
94 |
Q |
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| T |
2629614 |
aactcccttaaataaattctaacaaatatctaacaatatctaaacattacctagtgacaagtcagttttctttattttaaaattgtactcaaaaatattt |
2629713 |
T |
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| Q |
95 |
tttgcttttaatatggaccacaccaattggctgccaatgagagtaatactcttcgagattcaaagcaagattttataaatagaagccctaccagtatagg |
194 |
Q |
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| T |
2629714 |
tttgcttttaatatggaccaaaccaattggctgccaatgagagtaatactcttcgagattcaaagcaagattttataaatagaagccctaccagtatagg |
2629813 |
T |
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| Q |
195 |
gattttagatatcgaagttagatattct |
222 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
2629814 |
gattttagatatcgaagttagatattct |
2629841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 2623908 - 2623961
Alignment:
| Q |
91 |
attttttgcttttaatatggaccacaccaattggctgccaatgagagtaatact |
144 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2623908 |
attttttgcttttaatatggaccacaccaattggctaccaatgagagtaatact |
2623961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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