View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_low_77 (Length: 237)
Name: NF3545_low_77
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 51803947 - 51804167
Alignment:
| Q |
1 |
gtaatcttcatccaagagaatatttgttgacttaatatctctatggataataggaaaaaccaaatcatggtgaaggtatgcaacaccctgagcaattcca |
100 |
Q |
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| T |
51803947 |
gtaatcttcatccaagagaatatttgttgacttaatatctctatggataataggaaaaaccaaatcatggtgaaggtatgcaacaccctgagcaattcca |
51804046 |
T |
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| Q |
101 |
agtgcaatcctataccttgtaggccaatccaaatgaatccaacccttatgaagagaatcatacaaagtaccatttggcatatactcataaaccaacaagc |
200 |
Q |
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| T |
51804047 |
agtgcaatcctataccttgtaggccaatccaaatgaatccaacccttgtgaagagaatcatacaaagtaccatttggcatatactcataaaccaacaagc |
51804146 |
T |
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| Q |
201 |
tacaatccaaacttgagaagc |
221 |
Q |
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| T |
51804147 |
tacaatccaaacttgagaagc |
51804167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 221
Target Start/End: Original strand, 36578512 - 36578668
Alignment:
| Q |
59 |
accaaatcatggtgaaggtatgcaacaccctgagcaattccaagtgcaatcctataccttgtaggccaatccaaatgaatccaacccttatgaagagaat |
158 |
Q |
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| T |
36578512 |
accaaatcatggtgaaggtatgcaagaccctaatcaattccaagttcgattctatacttagtaggtcgatccaact----------cttgtgaagtgaat |
36578601 |
T |
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| Q |
159 |
catacaaagtaccatttggcatatactcat----aaaccaacaagctacaatccaaacttgagaagc |
221 |
Q |
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| T |
36578602 |
catataaagtaccatttggcatgtactcataaacaaaccaacaagctacaatccaaaattgagaagc |
36578668 |
T |
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