View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_low_79 (Length: 236)
Name: NF3545_low_79
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_79 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26463841 - 26463619
Alignment:
| Q |
1 |
cttgaattaacacatgttatcaaaccattacaacatggtttctgtctgctaagaaatgtaattcaagttttcatgtgttgctagttgatacttgtacata |
100 |
Q |
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| T |
26463841 |
cttgaattaacacatgttatcaaaccattacaacatggtttctgtctgctaagaaatgtaattcaagttttcatgtgttgctagttgatacttgtacata |
26463742 |
T |
|
| Q |
101 |
ccttcgccatcgtaccttcgccgtcgacaagaacaacaaaaacaacgcacacaagatgttatagtcaattgtggttcattgatttattgaaagttttgtc |
200 |
Q |
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| T |
26463741 |
ccttcgccatcgtaccttcgccgtcgacaagaacaacaaaaacaacgcacacaagatgttatagtcaattgcggttcattgatttattgaaagttttgtc |
26463642 |
T |
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| Q |
201 |
ttaattttgattcattgaaagtg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
26463641 |
ttaattttgattcattgaaagtg |
26463619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 31197591 - 31197503
Alignment:
| Q |
135 |
aacaaaaacaacgcacacaagatgttatagtcaattgtggttcattgatttattgaaagttttgtcttaattttgattcattgaaagtg |
223 |
Q |
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| T |
31197591 |
aacaaaaacaacgcacacaagatgttatagtcaattgcggttcattgattcattgaaagttttgtcttaattttgattcattgaaagtg |
31197503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 48062917 - 48062831
Alignment:
| Q |
18 |
tatcaaaccattacaacatggtttctgtctgctaagaaatgta---attcaagttttcatgtgttgctagttgatacttgtacatac |
101 |
Q |
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| T |
48062917 |
tatcaaaccatgatgacatggcttctgtctgctaagaaatgtacagattcaagttttcatgtgttgctagttgatacttgtacatac |
48062831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 55866966 - 55866928
Alignment:
| Q |
117 |
ttcgccgtcgacaagaacaacaaaaacaacgcacacaag |
155 |
Q |
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| T |
55866966 |
ttcgcagtcgacaagaacaacaaaatcaacgcacacaag |
55866928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 29143806 - 29143844
Alignment:
| Q |
117 |
ttcgccgtcgacaagaacaacaaaaacaacgcacacaag |
155 |
Q |
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| T |
29143806 |
ttcgccgtcgacaagaacaacaaaaacaacgcacacaag |
29143844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 155
Target Start/End: Complemental strand, 47558636 - 47558608
Alignment:
| Q |
127 |
acaagaacaacaaaaacaacgcacacaag |
155 |
Q |
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| T |
47558636 |
acaagaacaacaaaaacaacgcacacaag |
47558608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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